User: Pierre Poulain

gravatar for Pierre Poulain
Reputation:
440
Status:
New User
Location:
France
Website:
http://cupnet.net/
Last seen:
7 years, 5 months ago
Joined:
8 years, 5 months ago
Email:
p*************@univ-paris-diderot.fr

Posts by Pierre Poulain

<prev • 26 results • page 1 of 3 • next >
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Answer: A: Bioinformatic Cartoon
... I like these ones from ibuch on Flickr ...
written 7.7 years ago by Pierre Poulain440
1
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4
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4
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Answer: A: Protein Structure Reconstruction
... The I-Tasser web server from Zhang lab could also do the job. ...
written 7.8 years ago by Pierre Poulain440
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11
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5.3k
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11
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Comment: C: Bioinformatics Career Survey 2011/2012
... @Pierre. Maybe a google doc form? All answers are then gathered in an (google doc) spreadsheet. ...
written 7.9 years ago by Pierre Poulain440
0
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1
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Comment: C: Refinement And Energy Calculation Of Nucleic Acid Structures
... Maybe because the phosphate backbone of nucleic acids is highly charged and interactions with water molecules are important. However, keep in mind that atom movements generated by energy minimization are rarely of large amplitude. ...
written 7.9 years ago by Pierre Poulain440
0
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1
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Answer: A: Refinement And Energy Calculation Of Nucleic Acid Structures
... In principle, energy minimization should not be different for nucleic acids and proteins since it is based on several evaluations of the first or second derivatives of the energy, whatever the energy actually is. The energy calculation however depends on the forcefield being used and the latter capt ...
written 7.9 years ago by Pierre Poulain440
1
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5
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5
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Answer: A: A List Of Regular-Expressions For Recognizing Ids From Various Databases
... Protein Data Bank (PDB): [0-9][A-Z0-9]{3} UniProt: [A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9] and [OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9] ...
written 7.9 years ago by Pierre Poulain440
0
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3
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Comment: C: Hydrophobic Core Of Protein, Pdb
... Could you be more specific? What do mean by "know"? The residues in the hydrophobic core? The size of the hydrophobic core? What did you read/do so far? Eventually, the PDB is a database and by extension a file format. The end of your question should be "structure" instead of "PDB"... ...
written 7.9 years ago by Pierre Poulain440
0
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2
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2.8k
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2
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Comment: C: Aminoacid Composition Using Biopython
... As Chris mentionned, Biopython is not necessary here. ...
written 8.0 years ago by Pierre Poulain440
0
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7
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7
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Comment: A: Incorrect / Unusual Entries In Main Databases (Genbank, Uniprot, Pdb)?
... Dear BioStar community, Thank you all for your interesting answers and comments. ...
written 8.0 years ago by Pierre Poulain440
1
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3
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Comment: C: Get Hetnam Information From A Pdb File
... Sorry but the above Python code is incorrect. Indeed, // are not used for comments (# instead), never use 'file' as a variable name since it is already used by Python, use the 'r' mode to read a file (not the 'w' one), the 'if' statement must be terminated by a colon (:) and eventually indentation i ...
written 8.1 years ago by Pierre Poulain440

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