User: mxs

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mxs530
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Posts by mxs

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Comment: C: Bioinformatics projects: Where to apply?
... NO that was simply a post to help the OP.... Which promoted me to ask a question in the context " I am looking for a project" (not "I am offering a project"). PS I represent only myself :) Edit: I see many job positions by companies being posted but what I am interested is where do those comp ...
written 9 days ago by mxs530
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Forum: Bioinformatics projects: Where to apply?
... Hi, I was wondering where would one go if one would like to apply for commercial bioinformatics projects. Are there any mailing lists or sites for small businesses to apply for. I am not talking about freelancer small gigs but professional medium/large projects that require from applicants cert ...
next-gen alignment forum sequence assembly written 9 days ago by mxs530
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Answer: A: Bioinformatics Service Providers
... [Exaltum Ltd][1] if You are interested into services involving software/platform development, NGS analysis, or getting your genome sequenced and analysed :) [1]: http://www.exaltum.eu ...
written 9 days ago by mxs530
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Comment: C: How to fetch those line having only similar characters.
... the idea is U count the characters separately and if you have only one type then occurrence of that character will be > 0 while the rest will have 0 so if you count the number of times you have occurrence > 0 if that number is > 1 than you don't have poly-something, thus this is the line yo ...
written 22 days ago by mxs530
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Answer: C: How to fetch those line having only similar characters.
... perl -lne '$a[0] = ($_ =~ tr/A//);$a[1]= ($_ =~ tr/T//);$a[2]=($_ =~ tr/C//);$a[3]=($_ =~ tr/G//); my $b =0; foreach(@a){$b++ if $_>0} print $_ if $b >1 ' myfile Under the assumption only ATCG are under the investigation ...
written 22 days ago by mxs530
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Agilent CGH arrays - How to pool two results (two arrays)
... Hi, One very quick question. I have two CytoCGH.txt files I am aware of rCGH package (https://github.com/fredcommo/rCGH) but have little experience with Agilent CytoCGH.txt files. Is it possible to merge two such files into one given that they are essentially biological replicates? Thnx ...
agilent cgh written 22 days ago by mxs530
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Pleiotropy and Epistasis database
... Hi, Does anyone know a good database that contains information regarding pleiortopic effect of genes from as many species as possible and the information about epistatic interactions, also from as many species as possible? So essentially I need information: gene species #ofEpiInter #ofPlei ...
pleiotropy epistasis database written 10 months ago by mxs530
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Comment: C: NGS trimming procedure - help required
... I did the entire pipeline,: adapter quality and phiX and now I have 2.54% out of the initial 15 mil... ok so this is as i expected a complete no go .... (I agree with all of you, messing with adapters is not the way to go. I do apologize for waisting your time, but i simple needed to see if maybe s ...
written 10 months ago by mxs530
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Comment: C: NGS trimming procedure - help required
... Thnx for your quick reply. I did this and got ~9% of reads surviving, which is less than 1.5 mil out of 15. in all samples. ...
written 10 months ago by mxs530
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NGS trimming procedure - help required
... Hi, some help required regarding my ngs data. Description of the problem: when I received some reads from illumina, first what i did is a quality check. This turned out to be terrible. Given 150-mers had a quality above 20 only in the first 80 positions. For everything else the quality drop ...
ngs trimming sequencing written 10 months ago by mxs530

Latest awards to mxs

Popular Question 21 months ago, created a question with more than 1,000 views. For Bioinformatic jobs outside academia?
Commentator 2.6 years ago, created a comment with at least 3 up-votes. For C: Retrieve a large dataset of biological sequences with Perl
Supporter 2.9 years ago, voted at least 25 times.
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: perl extract sequences
Scholar 3.0 years ago, created an answer that has been accepted. For A: How to extract all non-seqenced positions from a genome (Fasta file)?
Scholar 3.0 years ago, created an answer that has been accepted. For A: How to extract all non-seqenced positions from a genome (Fasta file)?
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: perl extract sequences
Appreciated 3.1 years ago, created a post with more than 5 votes. For Bioinformatic jobs outside academia?

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