User: mxs

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mxs530
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Posts by mxs

<prev • 82 results • page 1 of 9 • next >
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Comment: C: sam to bam
... i don't need it for SRA. i need it for something else unrelated to bioinformatis and it fits perfectly but i do not need anything else except sam2bam utility :) I mean this is like seqan u need one ting but have to drag the entire library with it.... thnx anyway ...
written 5 months ago by mxs530
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Comment: C: sam to bam
... yea but even the blast developers realized at one point that it is just too impractical and old school to put everything into one box like blastall was before. so i figured maybe there was some movement toward 21 century with samtools too :) but thnx ...
written 5 months ago by mxs530
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sam to bam
... Hi, Anyone knows a simple standalone sam2bam conversion tool. I do not want to download and install the whole samtools just to do a simple conversion (under the assumption that it is simple) thnx ...
ngs alignment written 5 months ago by mxs530 • updated 5 months ago by h.mon21k
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Comment: C: Bioinformatics projects: Where to apply?
... NO that was simply a post to help the OP.... Which promoted me to ask a question in the context " I am looking for a project" (not "I am offering a project"). PS I represent only myself :) Edit: I see many job positions by companies being posted but what I am interested is where do those comp ...
written 9 months ago by mxs530
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Forum: Bioinformatics projects: Where to apply?
... Hi, I was wondering where would one go if one would like to apply for commercial bioinformatics projects. Are there any mailing lists or sites for small businesses to apply for. I am not talking about freelancer small gigs but professional medium/large projects that require from applicants cert ...
next-gen alignment forum sequence assembly written 9 months ago by mxs530
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Answer: A: Bioinformatics Service Providers
... [Exaltum Ltd][1] if You are interested into services involving software/platform development, NGS analysis, or getting your genome sequenced and analysed :) [1]: http://www.exaltum.eu ...
written 9 months ago by mxs530
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Comment: C: How to fetch those line having only similar characters.
... the idea is U count the characters separately and if you have only one type then occurrence of that character will be > 0 while the rest will have 0 so if you count the number of times you have occurrence > 0 if that number is > 1 than you don't have poly-something, thus this is the line yo ...
written 9 months ago by mxs530
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Answer: C: How to fetch those line having only similar characters.
... perl -lne '$a[0] = ($_ =~ tr/A//);$a[1]= ($_ =~ tr/T//);$a[2]=($_ =~ tr/C//);$a[3]=($_ =~ tr/G//); my $b =0; foreach(@a){$b++ if $_>0} print $_ if $b >1 ' myfile Under the assumption only ATCG are under the investigation ...
written 9 months ago by mxs530
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Agilent CGH arrays - How to pool two results (two arrays)
... Hi, One very quick question. I have two CytoCGH.txt files I am aware of rCGH package (https://github.com/fredcommo/rCGH) but have little experience with Agilent CytoCGH.txt files. Is it possible to merge two such files into one given that they are essentially biological replicates? Thnx ...
agilent cgh written 9 months ago by mxs530
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Pleiotropy and Epistasis database
... Hi, Does anyone know a good database that contains information regarding pleiortopic effect of genes from as many species as possible and the information about epistatic interactions, also from as many species as possible? So essentially I need information: gene species #ofEpiInter #ofPlei ...
pleiotropy epistasis database written 19 months ago by mxs530

Latest awards to mxs

Popular Question 2.5 years ago, created a question with more than 1,000 views. For Bioinformatic jobs outside academia?
Commentator 3.3 years ago, created a comment with at least 3 up-votes. For C: Retrieve a large dataset of biological sequences with Perl
Supporter 3.6 years ago, voted at least 25 times.
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: perl extract sequences
Scholar 3.7 years ago, created an answer that has been accepted. For A: How to extract all non-seqenced positions from a genome (Fasta file)?
Scholar 3.7 years ago, created an answer that has been accepted. For A: How to extract all non-seqenced positions from a genome (Fasta file)?
Teacher 3.8 years ago, created an answer with at least 3 up-votes. For A: perl extract sequences
Appreciated 3.9 years ago, created a post with more than 5 votes. For Bioinformatic jobs outside academia?

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