User: moldach

gravatar for moldach
moldach60
Reputation:
60
Status:
Trusted
Location:
Austria/Vienna/CeMM
Website:
https://prairiestopatc...
Twitter:
MattOldach
Last seen:
4 months, 1 week ago
Joined:
3 years, 6 months ago
Email:
m******@ucalgary.ca

Data-scientist/Bioinformatician working with various ‘Omics data (bulk RNA-seq, scRNA-seq, ATAC-Seq, ChIP-seq, Proteomics). Comfortable using Linux, HPCs, Cloud-computing, Git, R programming and Python

Posts by moldach

<prev • 33 results • page 1 of 4 • next >
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Comment: C: compare two gene lists
... Sadly this does not work even on numerically sorted ASCII text files ...
written 6 months ago by moldach60
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Comment: C: compare two gene lists
... Indeed I did *facepalm*, edited the post to include it now ...
written 6 months ago by moldach60
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Comment: A: compare two gene lists
... I'm having a similar issue, albeit a more complex example, and have an ongoing question on Stack Overflow where `grep -h -w -f file2 file1` should work but for unknown reasons is not working. I would appreciate it if someone could take a [look at this][1] and suggest a solution. [1]: https://sta ...
written 6 months ago by moldach60
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Answer: A: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 201
... Ever since CRISPR-Cas9 was used to edit human cells in 2013 there has been optimism of treating virtually every disease. In 2018 we will likely see a move into the clinic [in Europe][1] and perhaps by 2019 in the U.S. There are [already trials in China][2] but researchers have yet to publish any ear ...
written 7 months ago by moldach60
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Comment: C: Handbooks for Bioinformatics Ninjas
... Inkscape is an awesome free-source alternative to Adobe Illustrator whereas GIMP is a free-source alternative to Adobe Photoshop. Both are good tools depending on what your ultimate aim is. GIMP/Photoshop are raster/bitmap graphics and are often used to edit photographs by adding effects and making ...
written 7 months ago by moldach60
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Answer: A: Is There A Database Of Known Dna Binding Proteins?
... [DNABP][1] is a database/manuscript, from late 2016, that built a machine learning method (Random Forest) to identify de-novo DNA-binding proteins using only sequence information: 1) the conservation of physiochemical protperties of the amino acids, and 2) the binding propensity of DNA-binding resid ...
written 7 months ago by moldach60
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Comment: C: Looking for a Chromatin database
... 1) The Human Protein Atlas contains both **Ensembl ID**'s and **Gene name**, however, the data-set provided to me by our Mass-Spec group has **Entrez_ID** and **Gene_symbol**. This is why I was comparing the Official_Gene_Symbol - which is what [DAVID][1] calls them - (*e.g.* SMARCA4) from my datase ...
written 8 months ago by moldach60
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Answer: A: Where all can I find Histone Modification data for certain Human and Mouse cells
... Histones and their modification in humans (mammals) can be found in several databases (in addition to ROADMAP) such as [HIstome][1], [Human Histone Modification Database][2], [iHMS][3], [HistoneDB][4], [Histone Systematic Mutation Database][5], and [WERAM][6] [1]: http://www.actrec.gov.in/histo ...
written 8 months ago by moldach60
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Comment: C: Looking for a Chromatin database
... I edited the post to describe in more detail what I was trying to achieve. This should give you (and other biostars users) a better understanding of my approach and potentially suggest alternatives. Thank you very much. ...
written 8 months ago by moldach60
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Comment: C: Looking for a Chromatin database
... 1. *Homo sapiens* 2. Simply a list of Official_Gene_Symbols (e.g. SMARCA4) ...
written 8 months ago by moldach60

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