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Posts by eric.letouze
... Hi, I am estimating the mutation rates (mutations/Mb) in a series liver tumors. How can I estimate the confidence interval of each mutation rate? I tried using the binomial test (binom.test function in R) but it is quite computation intensive... Any better idea? Thanks you very much in advance, ...
... Hi, I have downloaded the release 3 of 1000 Genomes data on their ftp server. I would like to apply quality thresholds to keep only SNPs with a good coverage and calling quality for each sample. However the genotype field only contains the genotype itself, without information on read depth and ge ...
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