User: bingnas

gravatar for bingnas
bingnas10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
2 years, 6 months ago
Joined:
4 years, 4 months ago
Email:
b******@gmail.com

I am graduate student, and would like to work at Exome sequencing data.

Posts by bingnas

<prev • 18 results • page 1 of 2 • next >
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Comment: C: Convert SNP data to 0,1,2 and 5
... yes I want it like PLINK format, I see you put --chr 1, you mean I should convert them by chromosome? in other word can I convert whole chromosomes in one time? I will do it and let you know what is going on! Thank you for your help ...
written 2.6 years ago by bingnas10
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Comment: C: Convert SNP data to 0,1,2 and 5
... Thank you WouterDeCoster for your answer! could you help me how to do it please or I would send you the data? Bing ...
written 2.6 years ago by bingnas10
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Convert SNP data to 0,1,2 and 5
... Hi there, I am looking for hire someone for reasonable price I have bam files for 22 subjects (human) mapped by Bowtie2 with hg-19. 1- I want SNP data vs reference genome (i.e hg19) from these samples. 2- Convert SNP genotype to 0,1,2 and 5. Where 0 is recessive homozygous and 2 dominant homozy ...
snp written 2.6 years ago by bingnas10 • updated 2.5 years ago by Jorge Amigo11k
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Comment: C: How to Convert SNP's that produced from Varscan into 0,1,2 ?
... can you more explain please! 0/0 mean homo and 1/1 also homo (dominant and recessive )? and 0/1 is hero? . is missing? Thank you Elme ...
written 2.6 years ago by bingnas10
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Comment: C: Splitting A Vcf File
... Hi Jorge, Could you please write the command for my vcf file named (ALLsamples.vcf), ?   Thank you Bing ...
written 3.4 years ago by bingnas10
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Answer: A: How to merge VCF files for SNP's ?
... Thank you ebown1955 for your help  Yes please, I would like to see that code if you do not mind! To be honest I am not familiar with bioinformatics, this is first time dealing with SNP's data, and would to convert the data to 0,1,2 and 5 that I can use Regression Analysis.   Bing ...
written 3.5 years ago by bingnas10
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Answer: A: How to merge VCF files for SNP's ?
... and from second command (variantsToTable) is: CHROM POS QUAL 1nt.GT 49nt2.GT 60nt3.GT 167nt4.GT 341nt5.GT 343nt6.GT chrM 3 24.03 T/C ./. ./. ./. ./. ./. chrM 4 22.12 C/A ./. G/G ./. G/G ./. c ...
written 3.5 years ago by bingnas10
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Answer: A: How to merge VCF files for SNP's ?
... Hi ebrown1955, Thank you very much for your a great answer, I would like to show you what I got from first commad ( CombineVariants) :     #CHROM POS ID REF ALT  3395_167 3395_1 3395_341 3395_343 3395_49 3395_60     chrM 3 . T C ...
written 3.5 years ago by bingnas10
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Comment: C: Why Vcftools Commands Not Working?
... Yes it is, Thank you so much Sukhdeep !   Bing ...
written 3.6 years ago by bingnas10
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Comment: C: How to Convert SNP's that produced from Varscan into 0,1,2 ?
... Thank you so much Michael ...
written 3.6 years ago by bingnas10

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