User: Tanvir Ahamed

Reputation:
290
Status:
Trusted
Location:
Sweden
Last seen:
4 months ago
Joined:
5 years, 7 months ago
Email:
m********@yahoo.com

Posts by Tanvir Ahamed

<prev • 82 results • page 1 of 9 • next >
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Comment: C: Whole human genome sequence of COVID19 patient
... I am not sure if people are sequencing the genome of the affected/recovered patient or not. But hopefully, genome comparision will give us some interesting insight. Waiting for the public data !! ...
written 4 months ago by Tanvir Ahamed 290
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Comment: C: Whole human genome sequence of COVID19 patient
... Completely agree about your thought!! ...
written 4 months ago by Tanvir Ahamed 290
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Comment: C: Whole human genome sequence of COVID19 patient
... Agree. A comparison of recovered patient and not- recovered (death) patient, could be an interesting point to study. ...
written 4 months ago by Tanvir Ahamed 290
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Comment: C: Whole human genome sequence of COVID19 patient
... User "genomax" has one of the clear thought of application. ...
written 4 months ago by Tanvir Ahamed 290
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Whole human genome sequence of COVID19 patient
... I am looking for a whole human genome sequence of COVID19 patient. Is there anything published? Thanks in advance. ...
covid19 written 4 months ago by Tanvir Ahamed 290 • updated 4 months ago by swbarnes28.2k
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Comment: C: how to make output plot from heatmap.2 square shaped?
... you can drag the plot window as much as u want !! ...
written 2.4 years ago by Tanvir Ahamed 290
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Comment: C: How to cluster single cell data using list of markers?
... You can try [SEURAT][1] , [MONOCLE][2]. There could be much more [awesome-single-cell][3] [1]: http://satijalab.org/seurat/ [2]: http://cole-trapnell-lab.github.io/monocle-release/ [3]: https://github.com/seandavi/awesome-single-cell ...
written 2.4 years ago by Tanvir Ahamed 290
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Comment: C: Find Corresponding GenBank ID
... I did this as a part of one of my project. This could be helpful library("genomes") proks <- reports("prokaryotes.txt") # BioProject Accession: PRJNA312015 biopro <- proks[grep("312015",proks$`BioProject ID`),] ftp_biopro <- biopro$`FTP Path` file_ty ...
written 2.5 years ago by Tanvir Ahamed 290
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Convert "minfi::RGChannelSet" class from OLD to NEW
... Hi, "RGChannelSet" is a class of data in minfi package. Very recently "SummarizedExperiment" package has change their class definition and so "RGChannelSet" has changed as "RGChannelSet" class is dependent on "SummarizedExperiment". Now I have saved a data in "RGChannelSet" class and I have los ...
rgchannelset minfi summarizedexperiment written 2.6 years ago by Tanvir Ahamed 290 • updated 7 months ago by said342790
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Read .eds formated file form QuantStudio 12K Flex Software in R
... I want to read data in R form QuantStudio™ 12K Flex Software which is .eds format. Can any one please suggest any package/code for this ? ...
R bioconductor quantstudio .eds written 3.8 years ago by Tanvir Ahamed 290

Latest awards to Tanvir Ahamed

Epic Question 15 months ago, created a question with more than 10,000 views. For Interpretation of Beta values : Methylation data
Popular Question 15 months ago, created a question with more than 1,000 views. For Missing value imputation for beta values of Methylation data
Popular Question 15 months ago, created a question with more than 1,000 views. For Relation between "MAPINFO" and "UCSC_CpG_Islands_Name" in Illumina manifest file
Popular Question 22 months ago, created a question with more than 1,000 views. For Compare control probe in 450k and EPIC
Great Question 2.3 years ago, created a question with more than 5,000 views. For Interpretation of Beta values : Methylation data
Epic Question 2.3 years ago, created a question with more than 10,000 views. For Extract sequence with header from a fasta file with specific ID given in another file
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Compare control probe in 450k and EPIC
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Map ensembl gene id form hg38 in hg19
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Missing value imputation for beta values of Methylation data
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Relation between "MAPINFO" and "UCSC_CpG_Islands_Name" in Illumina manifest file
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: Frequency of a unique sequence in a fasta file
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Interpretation of Beta values : Methylation data
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Interpretation of Beta values : Methylation data
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Relation between "MAPINFO" and "UCSC_CpG_Islands_Name" in Illumina manifest file
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Compare 450k with EPIC
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Interpretation of Beta values : Methylation data
Great Question 3.5 years ago, created a question with more than 5,000 views. For Extract sequence with header from a fasta file with specific ID given in another file
Appreciated 3.8 years ago, created a post with more than 5 votes. For A: How can I BLAST 4,54,871 sequences?
Supporter 4.4 years ago, voted at least 25 times.
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Frequency of a unique sequence in a fasta file
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Extract sequence with header from a fasta file with specific ID given in another file
Popular Question 5.0 years ago, created a question with more than 1,000 views. For Extract sequence with header from a fasta file with specific ID given in another file
Teacher 5.2 years ago, created an answer with at least 3 up-votes. For A: Frequency of a unique sequence in a fasta file
Teacher 5.5 years ago, created an answer with at least 3 up-votes. For A: Frequency of a unique sequence in a fasta file

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