User: Mehmet

gravatar for Mehmet
Mehmet410
Reputation:
410
Status:
Trusted
Location:
Japan
Last seen:
4 hours ago
Joined:
3 years, 6 months ago
Email:
m*********@duzce.edu.tr

Posts by Mehmet

<prev • 304 results • page 1 of 31 • next >
0
votes
0
answers
326
views
0
answers
Comment: C: RATT annotation transfer tool usage.
... OK. I will do as soon as possible. ...
written 5 days ago by Mehmet410
3
votes
1
answer
90
views
1
answers
Answer: C: TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
... Tophat and Hisat2 are splicer aligner, therefore there must be intron-exon junction. In bacteria, as you know, there is no intron. I suggest you use not splicer aligner; such as Bowtie2. ...
written 5 days ago by Mehmet410
0
votes
0
answers
112
views
0
answers
Comment: C: get domains of proteins
... Please have a look: [https://www.biostars.org/p/238489/][1] [1]: https://www.biostars.org/p/238489/ ...
written 7 days ago by Mehmet410
0
votes
0
answers
107
views
0
answers
Comment: C: SHAPEIT Segmentation Fault on Input Read-In
... Can you increase memory that you allocate for this program? ...
written 19 days ago by Mehmet410
1
vote
0
answers
148
views
0
answers
Comment: C: segmentation fault (core dumped) when running unikalow
... Yes, it is a kind of memory issue. ...
written 19 days ago by Mehmet410
0
votes
0
answers
107
views
0
answers
Comment: C: SHAPEIT Segmentation Fault on Input Read-In
... Hi, `core dumped` seems a kind of memory issue. Have you checked RAM? ...
written 20 days ago by Mehmet410
0
votes
0
answers
95
views
0
answers
Comment: C: Orthofinder:How to obtain single copy homologous sequences from result files
... As you already used protein sequences of 8 marine species and found 8000 single copy genes (proteins) in result directory with orthogroups assigned by orthofinder, you can pick gene ids of each species from `SingleCopyOrthogroups.txt` file, like this: grep -Fwf SingleCopyOrthogroups.txt Orth ...
written 24 days ago by Mehmet410
0
votes
0
answers
134
views
0
answers
Comment: C: Homer motif analyisi
... You can add two results separately; 1. Known motifs 2. Novel or candidate motifs. ...
written 26 days ago by Mehmet410
0
votes
0
answers
150
views
0
answers
Comment: C: dN/dS analysis of genomes
... the analysis did not disrupt. Yes, I have star tree and best tree values for each gene. But I did not get omega values. Is it fine to use a best tree that has highest likelihood value as a tree file in next codeml run? ...
written 29 days ago by Mehmet410
0
votes
1
answer
107
views
1
answers
Answer: A: Mapping reads against a de novo assembly -- no genome available
... Please have a look. [Question: Mapping onto the Transcriptome, RNA-seq][1] [1]: https://www.biostars.org/p/262240/ ...
written 4 weeks ago by Mehmet410

Latest awards to Mehmet

Popular Question 4 days ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Teacher 5 days ago, created an answer with at least 3 up-votes. For C: TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
Popular Question 22 days ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 29 days ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 5 weeks ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 7 weeks ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 8 weeks ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 8 weeks ago, created a question with more than 1,000 views. For phylogenetic tree after ortholog finding by orthoMCL
Popular Question 9 weeks ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 3 months ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 3 months ago, created a question with more than 1,000 views. For single copy genes for phylogenetic tree after orthomcl tool
Popular Question 3 months ago, created a question with more than 1,000 views. For phylogenetic tree after ortholog finding by orthoMCL
Popular Question 5 months ago, created a question with more than 1,000 views. For phylogenetic tree after ortholog finding by orthoMCL
Supporter 8 months ago, voted at least 25 times.
Popular Question 10 months ago, created a question with more than 1,000 views. For phylogenetic tree after ortholog finding by orthoMCL
Popular Question 13 months ago, created a question with more than 1,000 views. For LASTZ aligner for HaploMerger
Popular Question 19 months ago, created a question with more than 1,000 views. For Trinity de novo transcript assembly too many transcripts
Centurion 21 months ago, created 100 posts.
Popular Question 23 months ago, created a question with more than 1,000 views. For CEGMA report meaning
Popular Question 23 months ago, created a question with more than 1,000 views. For Augustus training and artemis
Popular Question 2.1 years ago, created a question with more than 1,000 views. For CEGMA report meaning

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 921 users visited in the last hour