User: kieft1bp
kieft1bp • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 1 month, 3 weeks ago
- Joined:
- 6 years ago
- Email:
- k*******@gmail.com
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by kieft1bp
<prev
• 5 results •
page 1 of 1 •
next >
0
votes
1
answer
150
views
1
answers
... Thanks for your simple answer. So, in my case from above, if I have a read that is 50 bp long it will be *trimmed* to 20 bp, and if I have a read that is 10bp it will be *extended* to 20bp in order to calculate final per-bp coverage? ...
written 7 weeks ago by
kieft1bp • 0
0
votes
1
answer
150
views
1
answer
... I am trying to extract per-base read mapping coverage from a BAM file based on several regions of interest in a BED file. For example, I want to get the coverage at each base pair for the following 1kb regions:
chr start end name score strand
chrI 182604 183604 region1 0 -
chrII 197700 ...
0
votes
0
answers
656
views
0
answers
... Yes, you're right. I was just wondering if there was a tool already that was written to solve the same task. Just trying not to reinvent the wheel. ...
written 24 months ago by
kieft1bp • 0
0
votes
0
answers
656
views
0
answers
... Thanks for the answer, Pierre, but the problem is a little more complicated than counting the instances of a string in each line. I've updated my question. My fasta sequences are just amino acids (with no information about carbon or nitrogen content), so what I actually need to do is reference a sep ...
written 24 months ago by
kieft1bp • 0
3
votes
0
answers
656
views
0
answers
... I have a multifasta file of amino acid sequences, around 1000 seqs total, like so:
- > seq_id_1
- MAWT........
- > seq_id_2
- MTRA.......
- ....
- > seq_id_1000
- MIVE.......
I want to calculate the molar C:N ratio (number of total carbon atoms in each sequence divided by the n ...
written 24 months ago by
kieft1bp • 0
Latest awards to kieft1bp
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1618 users visited in the last hour