User: greener

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greener10
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New User
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United States
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1 year, 1 month ago
Joined:
4 years, 5 months ago
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g******@uw.edu

Posts by greener

<prev • 5 results • page 1 of 1 • next >
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Comment: A: Open source alternatives to SureCell RNA Single-Cell App in Basespace?
... Sure Cell is illumina’s single Cell system with Bio-Rad. http://www.bio-rad.com/en-hr/product/ddseq-single-cell-isolator?ID=OKNWBSE8Z So far it seems the only way to generated useable data for analysis is to run it through base space. I’m hoping to find some open source options. Thanks ...
written 15 months ago by greener10
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Open source alternatives to SureCell RNA Single-Cell App in Basespace?
... I have some single Cell data obtained from a ddseq / Illumina. I would prefer to process this data on my linux server instead of base space. (Base space costs money). Any alternatives instead of using SureCell RNA Single-Cell App in Basespace ? I looked around and couldn’t find anything. Any suggest ...
illumina sure cell single cell ddseq rna-seq written 15 months ago by greener10 • updated 11 days ago by ibseq120
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Limma model matrix question
... Dear Gordon and others, I have a limma/design matrix related question that I was hoping to get some advice. Our study contains a number of different treatment groups. We will call this parameter “gr” In each treatment group, we have a number of time points - the same time points for all individua ...
design matrix contrasts limma rna-seq written 24 months ago by greener10
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Answer: A: Consensus Fasta Sequence Of A Given Genomic Region For Individuals From 1000G
... I am trying to do the same thing. I would like to generate a fasta file on a predefined region chr7:128575994-128592088 from the 1000 genomes project. Ideally I'd like to have the output of that region from each individual. It would be helpful to know if the above approach was every successful (and ...
written 3.7 years ago by greener10
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Error in STAR's bams when running ht-seq
... Hi I am using the newest version of star that generated sorted bams and attempting to generate counts using ht-seq. STAR creates the bams successfully but when I try to run ht-seq it generates the following error (below). Any suggestions folks have is appreciated. Thanks -Rich STAR command; /vol01 ...
software error python ht-seq star rna-seq written 4.5 years ago by greener10 • updated 4.5 years ago by Sean Davis25k

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Popular Question 23 months ago, created a question with more than 1,000 views. For Error in STAR's bams when running ht-seq

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