User: ifudontmind_plzz

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Netherlands
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Posts by ifudontmind_plzz

<prev • 39 results • page 1 of 4 • next >
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Comment: C: Filter variants based on multiple condition
... @Pierre, i assume bcftools isec -c all A.vcf.gz B.vcf.gz C.vcf.gz D.vcf.gz, gives variants in A and B but not in C and D. But i would like to have variants in A OR B but not in C & D. Any suggestions? ...
written 14 months ago by ifudontmind_plzz130
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(Closed) Filter variants based on multiple condition
... I have four vcf files (two patient and two control samples). I want to select variants present in either one of the patient and not in controls samples. ...
variant filtering next-gen snp written 14 months ago by ifudontmind_plzz130
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Comment: C: length of quality sequence and length of read do not match in fastq
... I will try to do the transfer once more and check. ...
written 3.5 years ago by ifudontmind_plzz130
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Comment: C: length of quality sequence and length of read do not match in fastq
... I did not do any quality trimming on these fastq files. When i tried to run bwa aln on these fastq files, it failed after 820 sequences have been processed. ...
written 3.5 years ago by ifudontmind_plzz130
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Comment: C: length of quality sequence and length of read do not match in fastq
... I got these fastq files from already published data. I could see at line 3272, the length of quality sequence and length of read do not match. ...
written 3.5 years ago by ifudontmind_plzz130
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length of quality sequence and length of read do not match in fastq
... I am trying to use cutadapt to filter low quality read from the paired end fastq files (paired end human exome sequence) . But im getting error In read named 'Run0016Lane6Tile1...': length of quality sequence and length of read do not match (1!=95). How should i deal with this? ...
alignment next-gen sequencing written 3.5 years ago by ifudontmind_plzz130 • updated 3.5 years ago by mastal5112.0k
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Comment: C: Comparing gene expression profiles between species
... @Manvendra..what do you mean by 4) assign mean of counts over different tratnscripts to their respective gene, transform it on log scale? ...
written 3.9 years ago by ifudontmind_plzz130
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Comment: A: download all samples from a study in BioProject
... i did manage to downlaod th run data one after each other. ...
written 4.0 years ago by ifudontmind_plzz130
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Comment: C: download all samples from a study in BioProject
... yes. Is there any way to process this data. ...
written 4.0 years ago by ifudontmind_plzz130
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Comment: C: download all samples from a study in BioProject
... great. could you show a sample script to download the run data? ...
written 4.0 years ago by ifudontmind_plzz130

Latest awards to ifudontmind_plzz

Popular Question 2.4 years ago, created a question with more than 1,000 views. For length of quality sequence and length of read do not match in fastq
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to normalize RNAseq raw read counts with out control?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Compare RNAseq data and find correlation between studies
Popular Question 2.4 years ago, created a question with more than 1,000 views. For mouse mm10 supporting file for GISTIC 2.0
Popular Question 2.4 years ago, created a question with more than 1,000 views. For script to run CrossMap for a set of bam files
Popular Question 2.4 years ago, created a question with more than 1,000 views. For download all samples from a study in BioProject
Student 2.4 years ago, asked a question with at least 3 up-votes. For How to annotate gene names for genomic coordinates?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For download all samples from a study in BioProject
Popular Question 2.8 years ago, created a question with more than 1,000 views. For download all samples from a study in BioProject
Popular Question 2.8 years ago, created a question with more than 1,000 views. For download all samples from a study in BioProject
Popular Question 3.0 years ago, created a question with more than 1,000 views. For download all samples from a study in BioProject
Popular Question 3.3 years ago, created a question with more than 1,000 views. For How to annotate gene names for genomic coordinates?

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