User: ifudontmind_plzz

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Posts by ifudontmind_plzz

<prev • 43 results • page 1 of 5 • next >
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Comment: C: Annotating Agilent micro array probe sequence with gene
... Indeed, that is an option. But i was wondering if there is some way to blat the sequence to a specific genome version and get the gene details. ...
written 4 months ago by ifudontmind_plzz150
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Comment: C: Annotating Agilent micro array probe sequence with gene
... @kevin, it is customized human 4x44K Microarray K ...
written 4 months ago by ifudontmind_plzz150
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Comment: C: Annotating Agilent micro array probe sequence with gene
... I only have probe sequences not probe ID. The probe id have been masked . I assume biomaRt converts probe ID not sequence. ...
written 4 months ago by ifudontmind_plzz150
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Annotating Agilent micro array probe sequence with gene
... Is there any way to convert Agilent Probe sequence to gene ID? I have got ~500 Agilent Probe sequence which needs to be annotated with GRCh38 gene id. ...
genome assembly gene written 4 months ago by ifudontmind_plzz150
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Comment: C: Filter variants based on multiple condition
... @Pierre, i assume bcftools isec -c all A.vcf.gz B.vcf.gz C.vcf.gz D.vcf.gz, gives variants in A and B but not in C and D. But i would like to have variants in A OR B but not in C & D. Any suggestions? ...
written 19 months ago by ifudontmind_plzz150
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(Closed) Filter variants based on multiple condition
... I have four vcf files (two patient and two control samples). I want to select variants present in either one of the patient and not in controls samples. ...
variant filtering next-gen snp written 19 months ago by ifudontmind_plzz150
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Comment: C: length of quality sequence and length of read do not match in fastq
... I will try to do the transfer once more and check. ...
written 4.0 years ago by ifudontmind_plzz150
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Comment: C: length of quality sequence and length of read do not match in fastq
... I did not do any quality trimming on these fastq files. When i tried to run bwa aln on these fastq files, it failed after 820 sequences have been processed. ...
written 4.0 years ago by ifudontmind_plzz150
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Comment: C: length of quality sequence and length of read do not match in fastq
... I got these fastq files from already published data. I could see at line 3272, the length of quality sequence and length of read do not match. ...
written 4.0 years ago by ifudontmind_plzz150
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length of quality sequence and length of read do not match in fastq
... I am trying to use cutadapt to filter low quality read from the paired end fastq files (paired end human exome sequence) . But im getting error In read named 'Run0016Lane6Tile1...': length of quality sequence and length of read do not match (1!=95). How should i deal with this? ...
alignment next-gen sequencing written 4.0 years ago by ifudontmind_plzz150 • updated 4.0 years ago by mastal5112.0k

Latest awards to ifudontmind_plzz

Great Question 18 months ago, created a question with more than 5,000 views. For download all samples from a study in BioProject
Great Question 18 months ago, created a question with more than 5,000 views. For How to annotate gene names for genomic coordinates?
Popular Question 18 months ago, created a question with more than 1,000 views. For length of quality sequence and length of read do not match in fastq
Popular Question 2.8 years ago, created a question with more than 1,000 views. For length of quality sequence and length of read do not match in fastq
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Popular Question 2.8 years ago, created a question with more than 1,000 views. For download all samples from a study in BioProject
Student 2.8 years ago, asked a question with at least 3 up-votes. For How to annotate gene names for genomic coordinates?
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