User: Mask
Mask • 170
- Reputation:
- 170
- Status:
- Trusted
- Location:
- India
- Last seen:
- 1 month, 1 week ago
- Joined:
- 6 years, 1 month ago
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- s******@karunya.edu
Posts by Mask
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0
votes
3
answers
6.1k
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3
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... what is this about ??? ...
written 3.5 years ago by
Mask • 170
0
votes
1
answer
1.7k
views
1
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... okay... Can you tell me which all files did you remove from the folder? ...
written 3.5 years ago by
Mask • 170
1
vote
1
answer
1.7k
views
1
answers
... Can you tell me which all files did you remove from the folder?
Thank you ...
written 3.5 years ago by
Mask • 170
1
vote
1
answer
1.7k
views
1
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... Yes. In working directory only. I have attached the file (diff_out) . The size of the folder is very less. Can you download and perform cummeRbund on that ...
written 3.5 years ago by
Mask • 170
5
votes
1
answer
1.7k
views
5 follow
1
answer
... There are two samples and I have performed the analysis as given in paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334321/ . But when I performed cummeRbund it gave following output.
> cuffl <-readCufflinks('diff_out')
> cuffl
CuffSet instance with:
0 samples
0 genes
0 isofor ...
written 3.5 years ago by
Mask • 170
• updated
3.5 years ago by
Satyajeet Khare • 1.6k
0
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0
answers
1.1k
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0
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... Thank You,
I am focusing on expression and mutations in coding regions. In the case of RNA-Seq, we may loose some variants in the coding region when compared with exome sequencing. Can I perform Exome seq for identifying transcript expression? ...
written 3.5 years ago by
Mask • 170
0
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0
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1.1k
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... Well, it is not an assignment question. "What have you tried?", there is nothing negative in it.
RNA-Seq is well known for calculating transcript expression. But, researches also do variant calling on RNA-seq data. In such case all mutations can't be identified due to alternative splicing. Also, the ...
written 3.5 years ago by
Mask • 170
0
votes
0
answers
1.1k
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0
answers
... If you feel it as an assignment question, I don't care. People with common sense can understand what I actually mean. In every blog there are some people like you with negative thoughts. ...
written 3.5 years ago by
Mask • 170
6
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0
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1.1k
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0
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... Following are the aim of my study
1. Transcript/Gene expression
2. Variant calling (Mutations all kinds [germline, somatic, snp, indel, copy number etc])
For the aforesaid purpose, what kind of sequencing strategy should I follow?
RNA-Seq or Whole Exome sequencing? Can you justify your answers? ...
written 3.5 years ago by
Mask • 170
2
votes
1
answer
1.5k
views
1
answers
... From where did you get the data? From a public database or your own custom data? If from public database share the identifier ...
written 3.6 years ago by
Mask • 170
Latest awards to Mask
Supporter
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Great Question
3.5 years ago,
created a question with more than 5,000 views.
For Getting error in running GATK (GenomeAnalysisTK-3.7)?
Popular Question
3.5 years ago,
created a question with more than 1,000 views.
For Variant Calling and Transcript expression from biological sample
Popular Question
3.5 years ago,
created a question with more than 1,000 views.
For Resources available for plant ortholog of rice genes
Popular Question
3.5 years ago,
created a question with more than 1,000 views.
For readcufflinks shows error in R cummeRbund Package
Popular Question
3.5 years ago,
created a question with more than 1,000 views.
For Getting error in running GATK (GenomeAnalysisTK-3.7)?
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