User: Mask

gravatar for Mask
Mask170
Reputation:
170
Status:
Trusted
Location:
India
Last seen:
1 month, 1 week ago
Joined:
6 years, 1 month ago
Email:
s******@karunya.edu

Posts by Mask

<prev • 18 results • page 1 of 2 • next >
0
votes
3
answers
6.1k
views
3
answers
Comment: C: Getting error in running GATK (GenomeAnalysisTK-3.7)?
... what is this about ??? ...
written 3.5 years ago by Mask170
0
votes
1
answer
1.7k
views
1
answers
Comment: C: readcufflinks shows error in R cummeRbund Package
... okay... Can you tell me which all files did you remove from the folder? ...
written 3.5 years ago by Mask170
1
vote
1
answer
1.7k
views
1
answers
Comment: C: readcufflinks shows error in R cummeRbund Package
... Can you tell me which all files did you remove from the folder? Thank you ...
written 3.5 years ago by Mask170
1
vote
1
answer
1.7k
views
1
answers
Comment: C: readcufflinks shows error in R cummeRbund Package
... Yes. In working directory only. I have attached the file (diff_out) . The size of the folder is very less. Can you download and perform cummeRbund on that ...
written 3.5 years ago by Mask170
5
votes
1
answer
1.7k
views
5 follow
1
answer
readcufflinks shows error in R cummeRbund Package
... There are two samples and I have performed the analysis as given in paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334321/ . But when I performed cummeRbund it gave following output. > cuffl <-readCufflinks('diff_out') > cuffl CuffSet instance with: 0 samples 0 genes 0 isofor ...
software error R cummerbund rna-seq written 3.5 years ago by Mask170 • updated 3.5 years ago by Satyajeet Khare1.6k
0
votes
0
answers
1.1k
views
0
answers
Comment: C: Variant Calling and Transcript expression from biological sample
... Thank You, I am focusing on expression and mutations in coding regions. In the case of RNA-Seq, we may loose some variants in the coding region when compared with exome sequencing. Can I perform Exome seq for identifying transcript expression? ...
written 3.5 years ago by Mask170
0
votes
0
answers
1.1k
views
0
answers
Comment: C: Variant Calling and Transcript expression from biological sample
... Well, it is not an assignment question. "What have you tried?", there is nothing negative in it. RNA-Seq is well known for calculating transcript expression. But, researches also do variant calling on RNA-seq data. In such case all mutations can't be identified due to alternative splicing. Also, the ...
written 3.5 years ago by Mask170
0
votes
0
answers
1.1k
views
0
answers
Comment: C: Variant Calling and Transcript expression from biological sample
... If you feel it as an assignment question, I don't care. People with common sense can understand what I actually mean. In every blog there are some people like you with negative thoughts. ...
written 3.5 years ago by Mask170
6
votes
0
answers
1.1k
views
0
answers
Variant Calling and Transcript expression from biological sample
... Following are the aim of my study 1. Transcript/Gene expression 2. Variant calling (Mutations all kinds [germline, somatic, snp, indel, copy number etc]) For the aforesaid purpose, what kind of sequencing strategy should I follow? RNA-Seq or Whole Exome sequencing? Can you justify your answers? ...
exome data mutation rna-seq snp indels written 3.5 years ago by Mask170
2
votes
1
answer
1.5k
views
1
answers
Comment: C: Illumina sequencing - paired end reads
... From where did you get the data? From a public database or your own custom data? If from public database share the identifier ...
written 3.6 years ago by Mask170

Latest awards to Mask

Supporter 5 weeks ago, voted at least 25 times.
Great Question 3.5 years ago, created a question with more than 5,000 views. For Getting error in running GATK (GenomeAnalysisTK-3.7)?
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Variant Calling and Transcript expression from biological sample
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Resources available for plant ortholog of rice genes
Popular Question 3.5 years ago, created a question with more than 1,000 views. For readcufflinks shows error in R cummeRbund Package
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Getting error in running GATK (GenomeAnalysisTK-3.7)?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 987 users visited in the last hour
_