User: fred.s.kremer

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Posts by fred.s.kremer

<prev • 17 results • page 1 of 2 • next >
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Using Trinity for RNA-Seq analysis in model organisms
... Hello! I'm beginning at RNA-Seq analysis and would like to do a differential expression analysis of some rice (O. sativa) datasets in different conditions. I looked at some protocols for DE analysis, and Trinity pipeline seems to be very straight-forward, although it was developed to be used in non ...
trinity rna-seq differential expression written 5 weeks ago by fred.s.kremer70 • updated 5 weeks ago by h.mon19k
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Is there a database for modeled / predicted protein structures?
... When i determine de structure of a protein using an experimental method, such as x-ray diffraction or NMR, the results may be submitted to Protein Data Bank. However, when the method used to determinate the structure is homology modelling, or threading, to where i may submit the results, as PDB does ...
database sequence protein modelling written 4 months ago by fred.s.kremer70 • updated 4 months ago by Michael Dondrup44k
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There is a way to convert MS data in Bruker ASCII data to MGF?
... There is a way to convert MS data in Bruker ASCII data to MGF? I have some files generated using the Bruker equipment, but only in ASCII data, and i have no access to the program to generate directly in MGF. ...
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Comment: C: What file format is it?
... Same thing, but thanks all of you for the help, i will wait the response of the technician that did the analysis. processing file: ascii/hboonkc.txt [ReaderFail] don't know how to read ascii/hboonkc.txt Error processing file ascii/hboonkc.txt ...
written 5 months ago by fred.s.kremer70
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Comment: C: What file format is it?
... Result from `mscovert`: processing file: ascii/hboonkc.ascii [ReaderFail] don't know how to read ascii/hboonkc.ascii Error processing file ascii/hboonkc.ascii (╯°□°)╯︵ ┻━┻ ...
written 5 months ago by fred.s.kremer70
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Comment: C: What file format is it?
... No header, only lines of data. ...
written 5 months ago by fred.s.kremer70
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Comment: C: What file format is it?
... The file extension is ".ASCII" lol ...
written 5 months ago by fred.s.kremer70
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Comment: C: What file format is it?
... Yes, but they don't know the equipment that was used, nor the protocol for data analysis. As it will take some time to get the information from the person that did the procedure, i prefer to try to discover the format based on the structure (as the analysis requires a certain urgency). ...
written 5 months ago by fred.s.kremer70
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What file format is it?
... I have received a few MS spectrometry results in an "ASCII" format, but have no idea in what format it is, what programs can i use to process it or how to convert it to the MGF format (which i use with X!Tandem). Here follows the first lines of one of them. 0.0196833,+,ESI,ms1,-,line,300.0000 ...
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Tool: A new tool to identify TALE genes in Xanthomonas oryzae genome and their targets in O. sativa: can anyone help by beta-testing?
... Hello everyone! I am developing a new tool to identify TALE genes in Xanthomonas oryzae genome and their respective targets in O. sativa. The tool uses AnnoTALE, talgetter, promoterome datasets derived from IRGSP and Osiris and QuickGO, and is implemented as a webserver. To use it is only necessary ...
tool genomics annotation tale xanthomonas webserver written 8 months ago by fred.s.kremer70 • updated 8 months ago by h.mon19k

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