User: dec986

gravatar for dec986
dec986190
Reputation:
190
Status:
Trusted
Location:
United States
Last seen:
2 months ago
Joined:
4 years, 2 months ago
Email:
d*****@gmail.com

Posts by dec986

<prev • 106 results • page 1 of 11 • next >
1
vote
2
answers
205
views
2
answers
Comment: C: Cannot identify software used to make image
... I finally got it all to work, there were numerous small issues tangently related to what you wrote here bernatgel, thank you very much! ...
written 8 weeks ago by dec986190
1
vote
2
answers
205
views
2
answers
Comment: C: Cannot identify software used to make image
... thanks, I'm reading it through (this is taking a while to get all of the R libraries sorted out) ...
written 9 weeks ago by dec986190
10
votes
2
answers
205
views
2
answers
Cannot identify software used to make image
... Hello, I'm trying to identify the image used to make this image, I cannot find out, and the author of the paper Figure 2A in DOI:10.1371/journal.pone.0120388 isn't answering his email, does anyone recognize what software was used to make this image? an edit to BioStars: none of these free image hos ...
dmr written 9 weeks ago by dec986190 • updated 9 weeks ago by bernatgel1.9k
0
votes
1
answer
206
views
1
answers
Comment: C: Diploid calls on chrY?
... These are the reference and alternate allele frequencies (count, and then GT within VCF): 2511 0/1 280 1/1 5 1/2 I don't know what to think anymore ...
written 11 weeks ago by dec986190
0
votes
1
answer
206
views
1
answers
Comment: C: Diploid calls on chrY?
... thank you! that is very useful. All 2,796 of my sites are diploid, from 2,649,476 to 59,032,665 Is there a possibility of some sort of technical error, or is this genuine XYY? ...
written 11 weeks ago by dec986190
2
votes
1
answer
206
views
1
answer
Diploid calls on chrY?
... Hello, I recently got my genome sequenced. chrY 59030922 . A G 1244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.580e-01;ClippingRankSum=0.00;DP=41;ExcessHet=3.0103;FS=9.230;MLEAC=1;MLEAF=0.500;MQ=37.33;MQRankSum=-4.563e+00;QD=30.36;ReadPosRankSum=-7.570e-01;SOR=0.076;VQSLOD=0.452;culprit=FS GT: ...
genome vcf written 11 weeks ago by dec986190 • updated 11 weeks ago by finswimmer11k
0
votes
1
answer
278
views
1
answers
Comment: C: samtools sort doesn't finish sorting bam file, just hangs for hours
... indeed, the issue was disk space, silly me. It would have been nice had samtools provided an error, however, the temp files used more space than I anticipated. ...
written 5 months ago by dec986190
4
votes
1
answer
278
views
6 follow
1
answer
samtools sort doesn't finish sorting bam file, just hangs for hours
... I am trying to sort a bam file, which is 4.1 GB in size using simply `samtools sort -o sorted.bam start.bam`, but the file hangs after about 6.5 hours when the sorted file is 3.1 GB, no warning messages or anything. None of the temp files have been deleted either. I don't think the computer ran ou ...
samtools written 5 months ago by dec986190
0
votes
1
answer
829
views
1
answers
Comment: C: how to get counts/TPM/etc. from stringtie?
... I've edited the original question to show how I'm running ballgown ...
written 8 months ago by dec986190
0
votes
1
answer
829
views
1
answers
Comment: C: how to get counts/TPM/etc. from stringtie?
... thanks, I've edited the original post ...
written 8 months ago by dec986190

Latest awards to dec986

Centurion 11 weeks ago, created 100 posts.
Popular Question 5 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 8 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 8 months ago, created a question with more than 1,000 views. For R programming: Keep Heatmap Items Within Image Frame
Popular Question 8 months ago, created a question with more than 1,000 views. For Conversion between .bedGraph or .bw to 7-column format
Popular Question 8 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 11 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 12 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: [Opinion] - What alignment software do you use?
Popular Question 13 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 13 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 14 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 16 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Scholar 17 months ago, created an answer that has been accepted. For A: Alignment with STAR produces unique bam files, but identical output from bedtool
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 2.1 years ago, created a question with more than 1,000 views. For R programming: Keep Heatmap Items Within Image Frame
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Conversion between .bedGraph or .bw to 7-column format
Popular Question 2.1 years ago, created a question with more than 1,000 views. For edgeR: no residual df: Cannot estimate dispersion
Supporter 2.1 years ago, voted at least 25 times.
Popular Question 2.5 years ago, created a question with more than 1,000 views. For DESeq2 comparison failure
Scholar 2.9 years ago, created an answer that has been accepted. For A: Alignment with STAR produces unique bam files, but identical output from bedtool

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2119 users visited in the last hour