User: dec986

gravatar for dec986
dec986200
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4 months, 4 weeks ago
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4 years, 7 months ago
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Posts by dec986

<prev • 106 results • page 1 of 11 • next >
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Comment: C: Cannot identify software used to make image
... I finally got it all to work, there were numerous small issues tangently related to what you wrote here bernatgel, thank you very much! ...
written 7 months ago by dec986200
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Comment: C: Cannot identify software used to make image
... thanks, I'm reading it through (this is taking a while to get all of the R libraries sorted out) ...
written 7 months ago by dec986200
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Cannot identify software used to make image
... Hello, I'm trying to identify the image used to make this image, I cannot find out, and the author of the paper Figure 2A in DOI:10.1371/journal.pone.0120388 isn't answering his email, does anyone recognize what software was used to make this image? an edit to BioStars: none of these free image hos ...
dmr written 7 months ago by dec986200 • updated 7 months ago by bernatgel2.0k
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Comment: C: Diploid calls on chrY?
... These are the reference and alternate allele frequencies (count, and then GT within VCF): 2511 0/1 280 1/1 5 1/2 I don't know what to think anymore ...
written 7 months ago by dec986200
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Comment: C: Diploid calls on chrY?
... thank you! that is very useful. All 2,796 of my sites are diploid, from 2,649,476 to 59,032,665 Is there a possibility of some sort of technical error, or is this genuine XYY? ...
written 7 months ago by dec986200
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Diploid calls on chrY?
... Hello, I recently got my genome sequenced. chrY 59030922 . A G 1244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.580e-01;ClippingRankSum=0.00;DP=41;ExcessHet=3.0103;FS=9.230;MLEAC=1;MLEAF=0.500;MQ=37.33;MQRankSum=-4.563e+00;QD=30.36;ReadPosRankSum=-7.570e-01;SOR=0.076;VQSLOD=0.452;culprit=FS GT: ...
genome vcf written 7 months ago by dec986200 • updated 7 months ago by finswimmer12k
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Comment: C: samtools sort doesn't finish sorting bam file, just hangs for hours
... indeed, the issue was disk space, silly me. It would have been nice had samtools provided an error, however, the temp files used more space than I anticipated. ...
written 10 months ago by dec986200
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samtools sort doesn't finish sorting bam file, just hangs for hours
... I am trying to sort a bam file, which is 4.1 GB in size using simply `samtools sort -o sorted.bam start.bam`, but the file hangs after about 6.5 hours when the sorted file is 3.1 GB, no warning messages or anything. None of the temp files have been deleted either. I don't think the computer ran ou ...
samtools written 10 months ago by dec986200
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Comment: C: how to get counts/TPM/etc. from stringtie?
... I've edited the original question to show how I'm running ballgown ...
written 13 months ago by dec986200
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Comment: C: how to get counts/TPM/etc. from stringtie?
... thanks, I've edited the original post ...
written 13 months ago by dec986200

Latest awards to dec986

Popular Question 7 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: [Opinion] - What alignment software do you use?
Centurion 7 months ago, created 100 posts.
Popular Question 10 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 13 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 13 months ago, created a question with more than 1,000 views. For R programming: Keep Heatmap Items Within Image Frame
Popular Question 13 months ago, created a question with more than 1,000 views. For Conversion between .bedGraph or .bw to 7-column format
Popular Question 13 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 16 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 17 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: [Opinion] - What alignment software do you use?
Popular Question 18 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 18 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 19 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 21 months ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Scholar 22 months ago, created an answer that has been accepted. For A: Alignment with STAR produces unique bam files, but identical output from bedtool
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Installation of Bcl2Fastq Fails
Popular Question 2.5 years ago, created a question with more than 1,000 views. For R programming: Keep Heatmap Items Within Image Frame
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Conversion between .bedGraph or .bw to 7-column format
Popular Question 2.5 years ago, created a question with more than 1,000 views. For edgeR: no residual df: Cannot estimate dispersion
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Popular Question 2.9 years ago, created a question with more than 1,000 views. For DESeq2 comparison failure
Scholar 3.4 years ago, created an answer that has been accepted. For A: Alignment with STAR produces unique bam files, but identical output from bedtool

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