User: ch_at
ch_at • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- New Zealand
- Last seen:
- 5 years ago
- Joined:
- 5 years, 4 months ago
- Email:
- c*************@gmail.com
Posts by ch_at
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... Hello,
I am currently trying to prepare a phylogenetic tree for a poster - what I want to do is map three traits to each tip label. I want one column for each trait with different colours. I have everything figured out, I have the legend, the headings for each column, I have the exact order of the ...
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... sorry, my bad. it actually says in the manual that the sites.txt and locs.txt created with the convert command are then used as input for the pairwise testing for recombination. I must have read the manual 100 times and totally missed that one sentence…
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written 5.1 years ago by
ch_at • 10
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... Hi,
I am using the program LDHATv2.2a for testing for recombination.
I have used an alignment in FASTA format(myseqs.fasta) and used the command
./convert -seq myseqs.fasta
to obtain the sites.txt and locs.txt file.
After this I did
./pairwise -seq myseqs.fasta -loc locs.txt
using the locs. ...
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... Thanks, you were right, I had no permission to write a new file in that folder!
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written 5.3 years ago by
ch_at • 10
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... Hi there,
I have just started using command line blast. And I have a set of sequences in a .fasta file that I want to run against all the nucleotide (nt) databases that I have downloaded manually from NCBI (nt.00, nt01 ....).
I have put all the nt databases in a folder called "db", where I have Bl ...
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