User: ch_at

gravatar for ch_at
ch_at10
Reputation:
10
Status:
New User
Location:
New Zealand
Last seen:
3 years, 12 months ago
Joined:
4 years, 3 months ago
Email:
c*************@gmail.com

Posts by ch_at

<prev • 5 results • page 1 of 1 • next >
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Plotting traits on phylogenetic tree in R - issue with aligning traits
... Hello, I am currently trying to prepare a phylogenetic tree for a poster - what I want to do is map three traits to each tip label. I want one column for each trait with different colours. I have everything figured out, I have the legend, the headings for each column, I have the exact order of the ...
traits R phylogenetic tree graphics written 4.0 years ago by ch_at10 • updated 11 months ago by Biostar ♦♦ 20
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Comment: C: LDHAT pairwise analysis to test for recombination
... sorry, my bad. it actually says in the manual that the sites.txt and locs.txt created with the convert command are then used as input for the pairwise testing for recombination. I must have read the manual 100 times and totally missed that one sentence…     ...
written 4.1 years ago by ch_at10
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LDHAT pairwise analysis to test for recombination
... Hi, I am using the program LDHATv2.2a for testing for recombination. I have used an alignment in FASTA format(myseqs.fasta) and used the command ./convert -seq myseqs.fasta to obtain the sites.txt and locs.txt file. After this I did ./pairwise -seq myseqs.fasta -loc locs.txt using the locs. ...
ldhat program testing for recombination written 4.1 years ago by ch_at10 • updated 4.0 years ago by Biostar ♦♦ 20
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Answer: A: Troubles running blastn against nt database
... Thanks, you were right, I had no permission to write a new file in that folder! ...
written 4.3 years ago by ch_at10
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Troubles running blastn against nt database
... Hi there, I have just started using command line blast. And I have a set of sequences in a .fasta file that I want to run against all the nucleotide (nt) databases that I have downloaded manually from NCBI (nt.00, nt01 ....). I have put all the nt databases in a folder called "db", where I have Bl ...
blast written 4.3 years ago by ch_at10 • updated 4.2 years ago by balasink10

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