User: qicaibiology
qicaibiology • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Last seen:
- 1 week, 3 days ago
- Joined:
- 5 years, 3 months ago
- Email:
- q***********@gmail.com
Posts by qicaibiology
<prev
• 80 results •
page 1 of 8 •
next >
0
votes
1
answer
2.0k
views
1
answers
... Hi Kevlin:
Thank you for the link, when I tried to re-do what the code instructed, but I got an error I can't understand.
My matrix contains 5 columns, column 1 to column4 are the counts at different stages, while column5 are the differences between colum3 and column1 (which is diff=column3-colum1) ...
written 10 days ago by
qicaibiology • 40
0
votes
1
answer
2.0k
views
1
answers
... Hi Kevin:
Is it possible to do the same in ComplexHeat map. I put the above command in Heatmap it throws out a message:"
> Error in Heatmap(mydat_2, name = "mat", Rowv =
> as.dendrogram(row_clust), : unused argument (Rowv =
> as.dendrogram(row_clust))
I read the manual of complexheat ...
written 10 days ago by
qicaibiology • 40
0
votes
2
answers
106
views
2
answers
Comment:
C: Boxplot or ggplot
... mydat2 <- tidyr::gather(mydat, key = "stage", value = "new_col", E11, E14, E18, Adult)
mydat is a matrix, I chekced all the numbers in E11, E14, E18, Adult are numeric. but got an error:
Error in gather_(data, key_col = compat_as_lazy(enquo(key)), value_col = compat_as_lazy(enquo(value) ...
written 12 days ago by
qicaibiology • 40
6
votes
2
answers
106
views
2
answers
... I am comparing gene expression level across 4 developmental stages: E11, E14, E18, Adult. I have about 800 genes selected. Each genes has a read at these satages. Now I made a matrix: the row name are gene ID, while the column name are the 4 stages. each columns contains the read number. I can easil ...
written 12 days ago by
qicaibiology • 40
• updated
12 days ago by
MatthewP • 620
1
vote
0
answers
88
views
0
answers
... I begin to use ComplexHeatmap to plot the dymamic change of values across different development stages in R.
1. I started from two dataframe, for example `df_1` and `df_2`, I merged them into `df_3` (`df_3 <- rbind(df_1, df_2)`. I have plot Heatmap on `df_3`, but I want the heatmap to be able ...
written 12 days ago by
qicaibiology • 40
• updated
12 days ago by
RamRS ♦ 27k
0
votes
0
answers
79
views
0
answers
... Right. I did not have code. I ran it in Rstudio. ...
written 12 days ago by
qicaibiology • 40
0
votes
0
answers
79
views
0
answers
... I run the code on Rstudio. on the right corner, there is a image, i just export it as pdf. ...
written 12 days ago by
qicaibiology • 40
0
votes
0
answers
79
views
0
answers
... Thank you. I exported it from R.
...
written 13 days ago by
qicaibiology • 40
4
votes
0
answers
79
views
0
answers
... Dear all:
I am using ggplot to do a barplot for geneOntology in R. The output is fine. However, I can only see the labeling of the bar in the saved png file. But if I saved it as pdf all the content is shown .
How should I adjust the size of the image.
My code is:
p <- ggplot(data=mydata_ ...
written 13 days ago by
qicaibiology • 40
• updated
13 days ago by
Kevin Blighe ♦ 60k
0
votes
0
answers
87
views
0
answers
... I saw a lot of people say it will work. But It did not work in my hand. In the end, I use `mutate(Term = fct_reorder(Term, logPValue))` to make it work.
I still do not know the reason. ...
written 13 days ago by
qicaibiology • 40
Latest awards to qicaibiology
Supporter
12 days ago,
voted at least 25 times.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1637 users visited in the last hour