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- Iran, Islamic Republic Of
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- 4 years, 4 months ago
Posts by pegah
... Dear all friends, I am writing to ask you about ARACNE plugin in Cytoscape. Is there anyone who has worked with this plugin? I am trying to reconstruct GRN based on expression data using the ARACNE algorithm. Although ARACNE handle low number of sample, the interaction number decrease when the s ...
... Hi there, the complete CLR code for running it in MATLAB for the expression data is something like the following code: [A, MIfull] = clr(data, 'normal', 10, 3) thresholdFDR = FDR(A, 0.05); counter=1; for i=1:4044 for j=i+1:4044 if(A(i,j)>=thresholdFDR) result(counter,1)=i; result(counter,2)=j; ...
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