User: kloetzl

gravatar for kloetzl
kloetzl960
Reputation:
960
Status:
Trusted
Location:
European Union
Website:
http://kloetzl.info/
Twitter:
kloetzl
Scholar ID:
Google Scholar Page
Last seen:
1 month, 1 week ago
Joined:
3 years, 6 months ago
Email:
k******@evolbio.mpg.de

Posts by kloetzl

<prev • 125 results • page 1 of 13 • next >
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Comment: C: fails to configure
... try `autoreconf -fi -Im4` ...
written 3 months ago by kloetzl960
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Answer: A: Join multiple sequence lines in to one.
... cat seq.txt| awk 'BEGIN{c=1}!/\[/{if(NF){n[c]=$1;s[c]=s[c] $2;c++}}/\[/{c=1}END{for( i in n){print n[i], s[i]}}' ...
written 3 months ago by kloetzl960
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Comment: C: Randomising the content of a site in a nucleotide alignment without altering com
... You might want to shuffle the columns or nucleotides using the [Fisher-Yates Algorithm](https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle). ...
written 4 months ago by kloetzl960
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Comment: C: Building bioinformatics tools in Ubuntu 17.10
... Why are you building things from source? Ubuntu comes with plenty of tools available via `apt`, including blast and bowtie. ...
written 5 months ago by kloetzl960
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Answer: A: How does Burrows-Wheeler Transformation work on genetic sequences?
... You are right, the BWT will have a hard time compressing random sequences of nucleotides as (uniform) random data is by definition hard to compress. However, genetic sequences are far from random. Just think of GC-bias, codon-bias, motifs, patterns in various forms (promotors, TATA-box), duplication ...
written 5 months ago by kloetzl960
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Comment: C: Algorithms in cwl
... This should be a comment, not an answer. ...
written 5 months ago by kloetzl960
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Answer: A: How to extract multiple bits of information that appear on different lines withi
... cat foo.txt | awk '/^>/{n=$2}!/^>/{printf "%.11s %d\n", $3, n}' ...
written 5 months ago by kloetzl960
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Comment: C: MAF vs VAF
... Don't forget the Multiple Alignment Format. ...
written 6 months ago by kloetzl960
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Comment: C: snap installation error
... That is weird, to say the least. The make file produces errors because the compiler turns warnings into errors because of the `-Werror` switch. If that is removed from the compilation process, the errors could be similar but should not be the same. ...
written 6 months ago by kloetzl960
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Answer: A: snap installation error
... `sed -i 's/-Werror//g' Makefile*` Not beautiful, but might help. ...
written 6 months ago by kloetzl960

Latest awards to kloetzl

Scholar 3 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 5 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 5 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 7 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Centurion 8 months ago, created 100 posts.
Scholar 10 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Commentator 2.4 years ago, created a comment with at least 3 up-votes. For C: Making a mac book Bioinfo ready (El Capitan)
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.4 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.4 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.5 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Supporter 2.5 years ago, voted at least 25 times.
Appreciated 2.5 years ago, created a post with more than 5 votes. For A: FASTA file of fixed length
Good Answer 2.5 years ago, created an answer that was upvoted at least 5 times. For A: FASTA file of fixed length
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.5 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Commentator 2.5 years ago, created a comment with at least 3 up-votes. For C: Making a mac book Bioinfo ready (El Capitan)
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 3.1 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence

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