User: kloetzl

gravatar for kloetzl
kloetzl990
Reputation:
990
Status:
Trusted
Location:
European Union
Website:
http://kloetzl.info/
Twitter:
kloetzl
Scholar ID:
Google Scholar Page
Last seen:
2 days, 12 hours ago
Joined:
3 years, 9 months ago
Email:
k******@evolbio.mpg.de

Posts by kloetzl

<prev • 126 results • page 1 of 13 • next >
3
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Answer: A: Organizing tools/ software
... Personally, I try to avoid `make install` from any software like the plague. Usually, I forget about the software so it just ends up filling my disk space and leading to other issues (not receiving any updates etc.). Instead these days I have a directory with a bunch of 3rd party software source fil ...
written 11 weeks ago by kloetzl990
0
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0
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174
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0
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Comment: C: fails to configure
... try `autoreconf -fi -Im4` ...
written 6 months ago by kloetzl990
1
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4
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271
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4
answers
Answer: A: Join multiple sequence lines in to one.
... cat seq.txt| awk 'BEGIN{c=1}!/\[/{if(NF){n[c]=$1;s[c]=s[c] $2;c++}}/\[/{c=1}END{for( i in n){print n[i], s[i]}}' ...
written 6 months ago by kloetzl990
0
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183
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Comment: C: Randomising the content of a site in a nucleotide alignment without altering com
... You might want to shuffle the columns or nucleotides using the [Fisher-Yates Algorithm](https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle). ...
written 7 months ago by kloetzl990
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3
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546
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3
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Comment: C: Building bioinformatics tools in Ubuntu 17.10
... Why are you building things from source? Ubuntu comes with plenty of tools available via `apt`, including blast and bowtie. ...
written 8 months ago by kloetzl990
4
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1
answer
232
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1
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Answer: A: How does Burrows-Wheeler Transformation work on genetic sequences?
... You are right, the BWT will have a hard time compressing random sequences of nucleotides as (uniform) random data is by definition hard to compress. However, genetic sequences are far from random. Just think of GC-bias, codon-bias, motifs, patterns in various forms (promotors, TATA-box), duplication ...
written 8 months ago by kloetzl990
0
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0
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217
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Comment: C: Algorithms in cwl
... This should be a comment, not an answer. ...
written 8 months ago by kloetzl990
4
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1
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262
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1
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Answer: A: How to extract multiple bits of information that appear on different lines withi
... cat foo.txt | awk '/^>/{n=$2}!/^>/{printf "%.11s %d\n", $3, n}' ...
written 8 months ago by kloetzl990
1
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0
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1.1k
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Comment: C: MAF vs VAF
... Don't forget the Multiple Alignment Format. ...
written 8 months ago by kloetzl990
0
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1
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428
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1
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Comment: C: snap installation error
... That is weird, to say the least. The make file produces errors because the compiler turns warnings into errors because of the `-Werror` switch. If that is removed from the compilation process, the errors could be similar but should not be the same. ...
written 9 months ago by kloetzl990

Latest awards to kloetzl

Scholar 11 weeks ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 6 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 8 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 8 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 10 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Centurion 11 months ago, created 100 posts.
Scholar 13 months ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 24 months ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Commentator 2.6 years ago, created a comment with at least 3 up-votes. For C: Making a mac book Bioinfo ready (El Capitan)
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.6 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.7 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.7 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Supporter 2.7 years ago, voted at least 25 times.
Appreciated 2.7 years ago, created a post with more than 5 votes. For A: FASTA file of fixed length
Good Answer 2.7 years ago, created an answer that was upvoted at least 5 times. For A: FASTA file of fixed length
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Convert multiple-sequence fasta file to single long sequence
Scholar 2.7 years ago, created an answer that has been accepted. For A: Convert multiple-sequence fasta file to single long sequence
Commentator 2.8 years ago, created a comment with at least 3 up-votes. For C: Making a mac book Bioinfo ready (El Capitan)

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