User: kloetzl
kloetzl • 990
- Reputation:
- 990
- Status:
- Trusted
- Location:
- European Union
- Website:
- http://kloetzl.info/
- Twitter:
- kloetzl
- Scholar ID:
- Google Scholar Page
- Last seen:
- 2 days, 12 hours ago
- Joined:
- 3 years, 9 months ago
- Email:
- k******@evolbio.mpg.de
Posts by kloetzl
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3
votes
3
answers
259
views
3
answers
Answer:
A: Organizing tools/ software
... Personally, I try to avoid `make install` from any software like the plague. Usually, I forget about the software so it just ends up filling my disk space and leading to other issues (not receiving any updates etc.). Instead these days I have a directory with a bunch of 3rd party software source fil ...
written 11 weeks ago by
kloetzl • 990
0
votes
0
answers
174
views
0
answers
Comment:
C: fails to configure
... try `autoreconf -fi -Im4` ...
written 6 months ago by
kloetzl • 990
1
vote
4
answers
271
views
4
answers
... cat seq.txt| awk 'BEGIN{c=1}!/\[/{if(NF){n[c]=$1;s[c]=s[c] $2;c++}}/\[/{c=1}END{for( i in n){print n[i], s[i]}}' ...
written 6 months ago by
kloetzl • 990
0
votes
0
answers
183
views
0
answers
... You might want to shuffle the columns or nucleotides using the [Fisher-Yates Algorithm](https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle). ...
written 7 months ago by
kloetzl • 990
1
vote
3
answers
546
views
3
answers
... Why are you building things from source? Ubuntu comes with plenty of tools available via `apt`, including blast and bowtie. ...
written 8 months ago by
kloetzl • 990
4
votes
1
answer
232
views
1
answers
... You are right, the BWT will have a hard time compressing random sequences of nucleotides as (uniform) random data is by definition hard to compress. However, genetic sequences are far from random. Just think of GC-bias, codon-bias, motifs, patterns in various forms (promotors, TATA-box), duplication ...
written 8 months ago by
kloetzl • 990
0
votes
0
answers
217
views
0
answers
Comment:
C: Algorithms in cwl
... This should be a comment, not an answer. ...
written 8 months ago by
kloetzl • 990
4
votes
1
answer
262
views
1
answers
... cat foo.txt | awk '/^>/{n=$2}!/^>/{printf "%.11s %d\n", $3, n}' ...
written 8 months ago by
kloetzl • 990
1
vote
0
answers
1.1k
views
0
answers
Comment:
C: MAF vs VAF
... Don't forget the Multiple Alignment Format. ...
written 8 months ago by
kloetzl • 990
0
votes
1
answer
428
views
1
answers
Comment:
C: snap installation error
... That is weird, to say the least. The make file produces errors because the compiler turns warnings into errors because of the `-Werror` switch. If that is removed from the compilation process, the errors could be similar but should not be the same. ...
written 9 months ago by
kloetzl • 990
Latest awards to kloetzl
Scholar
11 weeks ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
Teacher
11 weeks ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
6 months ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
8 months ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
8 months ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
10 months ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
Centurion
11 months ago,
created 100 posts.
Scholar
13 months ago,
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For A: Convert multiple-sequence fasta file to single long sequence
Teacher
16 months ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Teacher
24 months ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
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2.6 years ago,
created a comment with at least 3 up-votes.
For C: Making a mac book Bioinfo ready (El Capitan)
Teacher
2.6 years ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
2.6 years ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
Teacher
2.6 years ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
2.7 years ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
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2.7 years ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
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2.7 years ago,
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For A: FASTA file of fixed length
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2.7 years ago,
created an answer with at least 3 up-votes.
For A: Convert multiple-sequence fasta file to single long sequence
Scholar
2.7 years ago,
created an answer that has been accepted.
For A: Convert multiple-sequence fasta file to single long sequence
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2.8 years ago,
created a comment with at least 3 up-votes.
For C: Making a mac book Bioinfo ready (El Capitan)
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