User: kloetzl
kloetzl • 960
- Reputation:
- 960
- Status:
- Trusted
- Location:
- European Union
- Website:
- http://kloetzl.info/
- Twitter:
- kloetzl
- Scholar ID:
- Google Scholar Page
- Last seen:
- 7 hours ago
- Joined:
- 3 years, 3 months ago
- Email:
- k******@evolbio.mpg.de
Posts by kloetzl
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Comment:
C: fails to configure
... try `autoreconf -fi -Im4` ...
written 13 days ago by
kloetzl • 960
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4
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190
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4
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... cat seq.txt| awk 'BEGIN{c=1}!/\[/{if(NF){n[c]=$1;s[c]=s[c] $2;c++}}/\[/{c=1}END{for( i in n){print n[i], s[i]}}' ...
written 15 days ago by
kloetzl • 960
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... You might want to shuffle the columns or nucleotides using the [Fisher-Yates Algorithm](https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle). ...
written 8 weeks ago by
kloetzl • 960
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3
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... Why are you building things from source? Ubuntu comes with plenty of tools available via `apt`, including blast and bowtie. ...
written 10 weeks ago by
kloetzl • 960
4
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answer
127
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... You are right, the BWT will have a hard time compressing random sequences of nucleotides as (uniform) random data is by definition hard to compress. However, genetic sequences are far from random. Just think of GC-bias, codon-bias, motifs, patterns in various forms (promotors, TATA-box), duplication ...
written 12 weeks ago by
kloetzl • 960
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115
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Comment:
C: Algorithms in cwl
... This should be a comment, not an answer. ...
written 12 weeks ago by
kloetzl • 960
4
votes
1
answer
147
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1
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... cat foo.txt | awk '/^>/{n=$2}!/^>/{printf "%.11s %d\n", $3, n}' ...
written 12 weeks ago by
kloetzl • 960
1
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253
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Comment:
C: MAF vs VAF
... Don't forget the Multiple Alignment Format. ...
written 3 months ago by
kloetzl • 960
0
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1
answer
192
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1
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Comment:
C: snap installation error
... That is weird, to say the least. The make file produces errors because the compiler turns warnings into errors because of the `-Werror` switch. If that is removed from the compilation process, the errors could be similar but should not be the same. ...
written 3 months ago by
kloetzl • 960
0
votes
1
answer
192
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Answer:
A: snap installation error
... `sed -i 's/-Werror//g' Makefile*` Not beautiful, but might help. ...
written 3 months ago by
kloetzl • 960
Latest awards to kloetzl
Scholar
15 days ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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12 weeks ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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12 weeks ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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12 weeks ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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12 weeks ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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3 months ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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4 months ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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For A: Convert multiple-sequence fasta file to single long sequence
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For A: Convert multiple-sequence fasta file to single long sequence
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For A: Convert multiple-sequence fasta file to single long sequence
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For C: Making a mac book Bioinfo ready (El Capitan)
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2.2 years ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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2.2 years ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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2.2 years ago,
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For A: Convert multiple-sequence fasta file to single long sequence
Scholar
2.2 years ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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2.2 years ago,
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For A: Convert multiple-sequence fasta file to single long sequence
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For A: FASTA file of fixed length
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For A: Convert multiple-sequence fasta file to single long sequence
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For C: Making a mac book Bioinfo ready (El Capitan)
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For A: Convert multiple-sequence fasta file to single long sequence
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For A: Convert multiple-sequence fasta file to single long sequence
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