User: ac

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ac20
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United States
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4 years, 2 months ago
Joined:
4 years, 9 months ago
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Posts by ac

<prev • 3 results • page 1 of 1 • next >
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MACS2 for K27me3 peak calling
... I'm trying to run MACS2 on K27me3 in a non-model organism. I know the peaks can be extremely broad and are generally weak compared to other ChIP signals but I'm wondering if you have input for what parameters work best at calling K27me3 besides the obvious '--broad'.   I ran it with default callpe ...
macs2 chip-seq written 4.4 years ago by ac20 • updated 4.4 years ago by Ian5.6k
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Comment: C: In R, is there a way to convert the density function into a data frame?
... I'm working on a ChIP-seq project where I'm looking at the MACS2 called peak lengths of differentially expressed H3K4me3 marked genes found in the presence of an RNAi knockdown of two methyl transferase enzymes. I am plotting the histogram of peak length of each respective RNAi knockdown affected ge ...
written 4.5 years ago by ac20
4
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In R, is there a way to convert the density function into a data frame?
... Is there a way to convert the density() function in R to a data-frame? So lets give the easiest example possible. Say my variable contains the numbers 2, 4, 4, 6 I want to be able to convert this numbers to a density data.frame.  Value Density 2 .25 4 .50 ...
R written 4.5 years ago by ac20 • updated 8 months ago by Biostar ♦♦ 20

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