User: pyjiang2

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pyjiang220
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United States
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2 years, 1 month ago
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2 years, 8 months ago
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Posts by pyjiang2

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Answer: A: How To Remove The Same Sequences In The Fasta Files?
... I tried fastx_collapser first, but it gives error for multiple aligned fasta sequences.   I found this useful website, which gives unique fasta sequences and concatenate the header name for the same sequences as well: http://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html_ncbi/html/fasta/uniqueseq. ...
written 2.7 years ago by pyjiang220
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bcftool merge -r ?
... Hi everyone, I have individual vcf files of indels and want to merge them into a big one, but only extract chromosome 3,4,5,7,8 into a unified file. The list of vcf files is in round1_indel.txt.  What I did is:  bcftools merge -l round1_indel.txt -o round1_indel.vcf  -r 3,4,5,7,8 However, the ou ...
vcf bcftool written 2.7 years ago by pyjiang220 • updated 2.5 years ago by Biostar ♦♦ 20

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