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Posts by pyjiang2
... I tried fastx_collapser first, but it gives error for multiple aligned fasta sequences. I found this useful website, which gives unique fasta sequences and concatenate the header name for the same sequences as well: http://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html_ncbi/html/fasta/uniqueseq. ...
... Hi everyone, I have individual vcf files of indels and want to merge them into a big one, but only extract chromosome 3,4,5,7,8 into a unified file. The list of vcf files is in round1_indel.txt. What I did is: bcftools merge -l round1_indel.txt -o round1_indel.vcf -r 3,4,5,7,8 However, the ou ...
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