User: Sam

gravatar for Sam
Sam10
Reputation:
10
Status:
New User
Location:
canada
Last seen:
5 days, 10 hours ago
Joined:
4 years, 6 months ago
Email:
b************@gmail.com

Posts by Sam

<prev • 9 results • page 1 of 1 • next >
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Comment: C: geom_bar plot with several variables
... Hi, Wonderful explanations. Thanks! But like to know how to rearrange the variables in the each box. for example, petal.length, sepal.length, petal.width, sepal.width Also how about display in descending order. Thanks ...
written 9 days ago by Sam10
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Comment: C: extract lines with multiple conditions on multiple fields/column
... Thanks, Arup for formatting the data. Also it would be helpful to know how to paste excel data on Biostar effectively. ![not sure why the data looks messy though it looks good on the preview][1] [1]: https://i.ibb.co/92CjrYk/bst.png ...
written 24 days ago by Sam10
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Answer: A: Denovo genome assembly
... Have you tried these combinations correct and PacBio reads with CANU Hybrid assembly ( corrected pacbio + illumina) using Masurca polish with pilon if necessary There is also a concept called meta-assembly using the different assembly from multiple assemblers to creat best one follow the link for m ...
written 25 days ago by Sam10
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Comment: C: extract lines with multiple conditions on multiple fields/column
... Thanks, Sus... But I have > 100 columns, is that possible to search a range of columns as a condition. for example. choose between $3 to $100 something like this ... awk -F "," '($3:$100 >= 0.5 && $3:$100 <= 1) input.csv > out.csv ...
written 25 days ago by Sam10
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Comment: C: extract lines with multiple conditions on multiple fields/column
... ************************** ...
written 26 days ago by Sam10
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7 follow
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extract lines with multiple conditions on multiple fields/column
... I have a big file contains a huge amount of SNP data, I like to search multiple columns ( here column 3 to 5) and filter any lines contain values between 0.5 to 1. SNP NN1 NN2 NN3 1 AG 0.0 0.0 1.0 2 CC 0.2 0.0 2.0 3 CC 0.3 0.5 0.0 4 AA 0.5 0.5 1.0 5 GG 0.4 0.0 0.0 expecte ...
grep sed awk written 26 days ago by Sam10 • updated 24 days ago by arup1.7k
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Comment: C: Calculating ratios by group in R
... Awesome...thanks a lot @zx8754, it worked well. I will make to use dput format for future requests. Friederike and Jean-Karim Heriche - sorry that the ratios were wrong (for missingness) in my expected output because it was from my entire data set (180x35000) as I subsampled but forgot to calculate ...
written 29 days ago by Sam10
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Calculating ratios by group in R
... Hi there, I would like to calculate ratio of NN (total markers/ total NN) from different groups (here 6 sample A and B-groups) in R. It must be easy but I couldn't any example online. I have found some similar answer but as a newbie to R, I couldn't annotate the code. https://stackoverflow.com/qu ...
R snp written 4 weeks ago by Sam10 • updated 29 days ago by zx87548.2k
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How to add header name to all annotation lines
... Hi there, how to append the header line (chromosome or scaffold) to the end of each annotation. ---------- **Input:** @Chr1 54584 54773 100 1.9 98 55019 55105 22 3.9 22 ---------- @Chr2 2226 2261 18 1.9 19 4211 4259 26 1.9 25 4426 4468 22 2 22 ---------- @utg7294 919 145 ...
fasta sequencing written 6 months ago by Sam10 • updated 6 months ago by JC8.4k

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