User: student-t
student-t • 430
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- Australia
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- http://www.smallchess....
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- scchess
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- 3 years, 3 months ago
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Bioinformatics engineer. Garvan Institute of Medical Research (https://www.garvan.org.au). Bioinformatics helps the world!
Posts by student-t
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... Yes. Apply FilterMutectCalls. ...
written 10 days ago by
student-t • 430
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Answer:
A: Dbsnp In Vcf
... ftp://ftp.ncbi.nlm.nih.gov/snp/organisms ...
written 17 days ago by
student-t • 430
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Comment:
C: Randomly Split A Fastq File
... This answer is wrong and should be given -1. ...
written 9 months ago by
student-t • 430
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5
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5
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Answer:
A: K-mers using JEllyfish
... Just use DSK. The software can take a single FASTA file.
dsk -abundance-min 0 -file A.V.10.fa -out ABCD
dsk2ascii -file ABCD.h5 -out ABCD.txt
Remember to specify the minimum abundance to zero. ...
written 11 months ago by
student-t • 430
0
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1
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... Tell me what he responds. ...
written 12 months ago by
student-t • 430
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... File not found... Can you please check? ...
written 13 months ago by
student-t • 430
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503
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... I have an incomplete GTF file with lines such as:
chr1 hg38_ct_UserTrack_3545 exon 94353 94355 2109 + . gene_id "R2_66"; transcript_id "R2_66_1";
This describes an exon. All the lines in my incomplete GTF file describe an exon or CDS.
**Question:**
I want to fix my GTF file. For instance, I ...
4
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1
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398
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... Whe I goto: ftp://ftp.broadinstitute.org/bundle/b37/, there are two FASTA files I can use for alignment:
- human_g1k_v37_decoy.fasta.gz
- human_g1k_v37.fasta.gz
The two files are very close in file size. As far as I understand, the decoy version is slighter faster. Other than that, anything e ...
written 14 months ago by
student-t • 430
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