User: Andrea

gravatar for Andrea
Andrea40
Reputation:
40
Status:
New User
Location:
Sweden
Last seen:
2 years ago
Joined:
4 years ago
Email:
d*****************@gmail.com

Posts by Andrea

<prev • 32 results • page 1 of 4 • next >
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Gene Regulatory Networks (GRN)
... hi i try to Learn Genetic Interactions from Saccharomyces cerevisiae, using Dynamic Bayesian Networks from BNT toolbox in MatLab. Collecting data from here :[http://genome-www.stanford.edu/yeast_stress/][1]. "In these experiments, the expression patterns in the Yeast S. cervisiae was explored dur ...
grn bayesian matlab written 2.6 years ago by Andrea40
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Comment: C: Time series microarray data
... what you mean with Tier4 ? ...
written 2.6 years ago by Andrea40
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Time series microarray data
... Hi, I m lokking for cancer time series data.I have searched in GEO but i cant find the form of the data i want. Isnt it supposed, that the form of time series data look like this? time1 time2 time3 time4 time5 .... gene1 gene2 gene3 gene4 .... ... Ive been usi ...
timeseries microarrays cancer written 2.6 years ago by Andrea40 • updated 2.6 years ago by pld4.8k
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Structure learning algorithms for Dynamic Bayesian Networks implemented in matlab
... Can anyone suggest me any other matlab package for structure learning with DBNs, besides REVEAL algorihm and DBMCMC? Currently working on gene expression datasets with time-series data. The alogorithms mentioned above can be found in the links below just in any case someone finds this post interesti ...
matlab dynamic bayesian network structure learning written 2.6 years ago by Andrea40
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Discretization of time series gene expression microarray data
... Supposed that we are trying to infer the underlying gene expression network from time series gene expression microarray data. Data from Microarrays are used and our tool is the Bayesian network toolbox in Matlab. There are algorithms such as REVEAL that cannt handle continuous values , so we want to ...
discretization gene expression microarrays written 2.6 years ago by Andrea40
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How to download multiple sequences from a database (ie Genbank) in Perl given a text file that contains the Ids?
... **The following code is just for one id and the get_seq_by_id doesnt accept more or an array** use Bio::DB::GenBank; my $gb=new Bio::DB::GenBank; my $seq= $gb->get_Seq_by_id ('ADE06225'); write_sequence (">roar.fa", 'fasta',$seq ); **Given a text file get me the sequenc ...
perl database bioperl download multiple sequences written 3.0 years ago by Andrea40 • updated 3.0 years ago by SES8.1k
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(Closed) Get Fasta file with Protein Sequences given a file with Genbank Ids using Perl
... **The following code allows you to download a protein sequence from Genbank and the store it in a fasta file.** use Bio::DB::GenBank; my $gb=new Bio::DB::GenBank; my $seq= $gb->get_Seq_by_id ('ADE06225'); write_sequence (">roar.fa", 'fasta',$seq ); **But what if i want ...
perl database download sequences bioperl written 3.0 years ago by Andrea40 • updated 3.0 years ago by mastal5112.0k
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(Closed) How to output your variable to a file in Perl?
... Lets say I have a variable $x=1. I want to print this variable to file, but not open a file ant print it there. Just output it in file form and not in my command promt . Any hint???. thanks! ...
perl print output file written 3.0 years ago by Andrea40
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Comment: C: Is it any website that allows you to test your Bioperl code???
... Strawberry Perl had absolutely no problem installing bioperl, Thanks! ...
written 3.0 years ago by Andrea40
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Comment: C: Cant find Clustalw.exe through Bioperl
... That was one of the first things I did but didn't changed anything. I Just made it work! Steps to make it work: 1)copy the `clustalw2.exe` 2)paste it on your e.g. Desktop 3)Rename it to `clustalw.exe` 4)Give the `$ENV{CLUSTALDIR`} the new path to `clustalw.exe` and it works! (at first trie ...
written 3.0 years ago by Andrea40

Latest awards to Andrea

Popular Question 2.5 years ago, created a question with more than 1,000 views. For Using BioPerl to create Phylogenetic Tree
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Aligning protein sequences using Perl

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