User: jerryzhaosjtu

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Can we do between-sample normalization like deseq/TMM on RPKM?
... Hi fellow biostars, I have RPKM for 20 samples(10 disease and 10 control). I'm trying to build a classification model, so I need to do between-sample normalization. I know that I could do deseq/TMM on raw read counts, but is it okay to do deseq/TMM on RPKM? Thanks a lot! Update: I found that deseq ...
rna-seq R genome written 3.1 years ago by jerryzhaosjtu0 • updated 3.1 years ago by agoel30

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