User: nibhelim

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nibhelim0
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Posts by nibhelim

<prev • 6 results • page 1 of 1 • next >
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Comment: C: isolate reads from a paired-ended fastq files that fall within a certain bp rang
... Thanks for the help! is this approach taking all the reads despite their direction/distance? I would like to preserve all the paired reads that are concordant or not (-> <-, -> ->, <- <-) and also partially/totally overlapping. ...
written 4 months ago by nibhelim0
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Comment: C: isolate reads from a paired-ended fastq files that fall within a certain bp rang
... hi swbarnes2, can you be a bit more specific on what are the 'read names' that I should isolate? sorry for the basic questions I'm a newbie in seq ...
written 5 months ago by nibhelim0
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isolate reads from a paired-ended fastq files that fall within a certain bp range
... hi folks, I have pair ended fastq files with 50bp reads (01_R1 and 01_R2). I need to make a new pair of fastq files that contains just the reads that fulfill this requirement: the reads of R2 should be within a certain range (let's say no more than 100bp) far from the respective read in R1. Also n ...
3c alignment chip-seq bowtie2 written 5 months ago by nibhelim0 • updated 5 months ago by ATpoint26k
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Answer: A: quantify signal in a chromosomal interval in different .bw files
... can you tell me how you do it? ...
written 3.6 years ago by nibhelim0
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quantify signal in a chromosomal interval in different .bw files
... hi there, I have several bigwig files that have been normalized. is there a way to obtain the value for the signal present in a certain chromosomal interval? I just want to get a value of the total signal between 2 chromosomal coordinates, and possibly do that for several intervals. ...
chip-seq bw bigwig written 3.6 years ago by nibhelim0 • updated 3.6 years ago by Ming Tang2.5k
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blast MEME motif against yeast genomic DNA
... hi there! I would like to blast a MEME motif (21bp with the % of each base in each position) against the yeast genome, to find how many of these motif are in the genome and where. is there a program that can easily do that??   thank you for the help!!!! ...
meme blast written 4.7 years ago by nibhelim0 • updated 4.7 years ago by Giovanni M Dall'Olio26k

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Popular Question 3.6 years ago, created a question with more than 1,000 views. For quantify signal in a chromosomal interval in different .bw files

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