User: E.Earley
E.Earley • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- United States
- Last seen:
- 11 months, 2 weeks ago
- Joined:
- 5 years, 10 months ago
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- e*******@gmail.com
Posts by E.Earley
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2
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... try their new CIBERSORTx
https://doi.org/10.1038/s41587-019-0114-2
https://cibersortx.stanford.edu/
Also check out SCDC
https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbz166/5699815
https://meichendong.github.io/SCDC/
...
written 11 months ago by
E.Earley • 20
0
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... I'm having trouble getting calcRoiCovg to work on some paired exome alignments.
I did get calcRoiCovg to finish completely and successfully on a test ROI file with 6 rows
genome music bmr calc-covg --bam-list test_bam_input.tsv --output-dir test_genome_music_out/ --reference-sequence /opt/indexes ...
written 5.8 years ago by
E.Earley • 20
• updated
5.8 years ago by
Cyriac Kandoth ♦ 5.5k
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... I got a similar error when certain ROI lines did not have an annotation column.
For example, this test ROI works just fine:
chr1 65831 65973 GENE
But this ROI causes an error:
chr1 65831 65973
genome music bmr calc-covg --bam-list test_bam_input.tsv --output-dir test_ ...
written 5.9 years ago by
E.Earley • 20
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2.6 years ago,
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For Genome MuSiC calcRoiCovg crashing
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