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Posts by E.Earley
... try their new CIBERSORTx https://doi.org/10.1038/s41587-019-0114-2 https://cibersortx.stanford.edu/ Also check out SCDC https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbz166/5699815 https://meichendong.github.io/SCDC/ ...
... I'm having trouble getting calcRoiCovg to work on some paired exome alignments. I did get calcRoiCovg to finish completely and successfully on a test ROI file with 6 rows genome music bmr calc-covg --bam-list test_bam_input.tsv --output-dir test_genome_music_out/ --reference-sequence /opt/indexes ...
... I got a similar error when certain ROI lines did not have an annotation column. For example, this test ROI works just fine: chr1 65831 65973 GENE But this ROI causes an error: chr1 65831 65973 genome music bmr calc-covg --bam-list test_bam_input.tsv --output-dir test_ ...
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