User: E.Earley
E.Earley • 20
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- United States
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- 3 days, 15 hours ago
- Joined:
- 4 years, 11 months ago
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Posts by E.Earley
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2
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... try their new CIBERSORTx
https://doi.org/10.1038/s41587-019-0114-2
https://cibersortx.stanford.edu/
Also check out SCDC
https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbz166/5699815
https://meichendong.github.io/SCDC/
...
written 3 days ago by
E.Earley • 20
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... I'm having trouble getting calcRoiCovg to work on some paired exome alignments.
I did get calcRoiCovg to finish completely and successfully on a test ROI file with 6 rows
genome music bmr calc-covg --bam-list test_bam_input.tsv --output-dir test_genome_music_out/ --reference-sequence /opt/indexes ...
written 4.9 years ago by
E.Earley • 20
• updated
4.9 years ago by
Cyriac Kandoth ♦ 5.5k
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... I got a similar error when certain ROI lines did not have an annotation column.
For example, this test ROI works just fine:
chr1 65831 65973 GENE
But this ROI causes an error:
chr1 65831 65973
genome music bmr calc-covg --bam-list test_bam_input.tsv --output-dir test_ ...
written 4.9 years ago by
E.Earley • 20
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20 months ago,
created a question with more than 1,000 views.
For Genome MuSiC calcRoiCovg crashing
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