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0
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Comment: C: limma voom - mean variance trend
6.2 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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1
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2.4k
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Answer: A: Running prepare.py on remote server
6.2 years ago by Kristoffer Vitting-Seerup ★ 4.2k
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0
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2.3k
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
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1
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2.4k
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Comment: C: Can I convert from PSI to RPKM?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
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1
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3.3k
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Comment: C: see reads in .bam file, no counts after HTseq
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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3.3k
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Comment: C: see reads in .bam file, no counts after HTseq
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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0
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2.0k
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Answer: A: denovo transcriptome assembly
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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5.6k
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Comment: C: Analysis rMATS of RNA Seq data
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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6.2k
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Comment: C: Alternative splicing analysis following kallisto?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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3.5k
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Answer: A: RNA seq data shows no gene expression but qPCR shows the same gene is upregulate
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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3.8k
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Comment: C: What is the most suitable normalisation technique for RNASeq data?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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5.6k
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Answer: A: Analysis rMATS of RNA Seq data
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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5.6k
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Comment: C: Analysis rMATS of RNA Seq data
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.8k
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Comment: C: Salmon quasi Index upgrade
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.5k
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Comment: A: de novo assembly of raw illumina reads of RNA seq experiment (24gb data)
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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2.4k
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Comment: C: Can I convert from PSI to RPKM?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
replies
2.4k
views
Comment: C: Can I convert from PSI to RPKM?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
1
reply
2.4k
views
Answer: A: Can I convert from PSI to RPKM?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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8.7k
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Comment: C: How to group gene dataset and run t.test for each row for every gene in R?
6.3 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
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1
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5.1k
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Answer: A: trim data with trimmomatic
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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2.3k
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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2.6k
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Comment: C: SpliceJumper installation issues. Particularly with make
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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2.6k
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Comment: C: SpliceJumper installation issues. Particularly with make
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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2.3k
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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0
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5.3k
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Answer: A: Stringtie: use htseq-count or prepDE.py to extract reads?
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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2.5k
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Answer: A: FastQC results interpretation
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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2.8k
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Comment: C: How to find SSR location i.e whether it is in CDS, or UTR
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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1.4k
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Comment: C: Transcriptome analysis between two sample.
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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1
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1.5k
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Answer: A: Can we directly use batch corrected gene expression (Bulk RNA-seq) for further d
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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2.1k
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Comment: C: Mean-variance trend in voom
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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3.3k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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1.2k
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Answer: A: Robust RNA-seq normalization
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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2
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8.2k
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Comment: C: How to make a plot with gProfileR results?
6.4 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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5.6k
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Comment: C: [rMATS] Number of AS Events from one sample
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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5.6k
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Comment: C: [rMATS] Number of AS Events from one sample
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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5.6k
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Comment: C: [rMATS] Number of AS Events from one sample
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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0
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3.5k
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Comment: Comment: TopHat error: IOError [errno 2] No such file or directory: '-o'
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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5.6k
views
Answer: A: [rMATS] Number of AS Events from one sample
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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5.6k
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Comment: C: [rMATS] Number of AS Events from one sample
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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1.5k
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Answer: A: ADVOCATE R package
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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1.5k
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Comment: C: ADVOCATE R package
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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5.9k
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Answer: A: how to deal with batch effect in TCGA RNA-seq dataset
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
4
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1
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18k
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Comment: C: Tools To Do the Alternative Splicing Analysis
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
5
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1
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6.0k
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Answer: A: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
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1
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2.3k
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Answer: A: When exactly is a gene "expressed"?
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.8k
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Comment: C: Cufflinks transcriptome (To build or not to build?)
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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1.8k
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Comment: C: Cufflinks transcriptome (To build or not to build?)
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.7k
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Answer: A: How to extract normalized matrix after using calcNormFact function (with TMM met
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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1.5k
views
Answer: A: Filtering values for two group separately
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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857
views
Sample level integration of two RNASeq datasets
RNA-Seq next-gen
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
489 results • Page 5 of 10
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