Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
5
votes
2
replies
3.6k
views
Answer: A: What is the difference between deferentially expressed genes and deferentially
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.2k
views
Answer: A: Queries regarding RNASeq sequencing
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.3k
views
Comment: C: Get counts for allele specific expression analysis
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
3.1k
views
Answer: A: Finding FASTQ files for TCGA Data
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
4
votes
0
replies
10k
views
Answer: A: correlations between principal components and known variables
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
2
replies
1.4k
views
Answer: A: CPAT error while analysis
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
17k
views
Comment: C: Faster way to get GC content and Coverage from .fasta
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
1.4k
views
Comment: C: CPAT error while analysis
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
2.3k
views
Comment: C: Run ASTALAVISTA for large number of files
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
2.3k
views
Comment: C: Run ASTALAVISTA for large number of files
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
2.3k
views
Answer: A: Run ASTALAVISTA for large number of files
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
1.2k
views
Comment: C: How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
4.7k
views
Comment: C: edgeR gives no DE genes <0.05 FDR
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.7k
views
Answer: A: how to change gtf to fasta file of cufflink, gffread
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
votes
0
replies
4.0k
views
Answer: A: Transcript vs. Gene TPM counts?
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
2.3k
views
Comment: C: Run ASTALAVISTA for large number of files
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
0
replies
3.0k
views
Comment: C: Stringie output doesn't have any gene names!
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
1.9k
views
Comment: C: GSEA for paired RNA-Seq data
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
0
replies
1.6k
views
Answer: A: STAR: Is it ok to align with an index created from genecode but count features f
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
votes
1
reply
3.0k
views
Answer: A: Stringie output doesn't have any gene names!
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
3.0k
views
Comment: C: Stringie output doesn't have any gene names!
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
votes
1
reply
1.9k
views
Answer: A: GSEA for paired RNA-Seq data
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
972
views
Answer: A: how to identify gene expression and genes responsible for virulence
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
votes
0
replies
1.1k
views
Equivavalent of rlog() or vst() for abundance values
RNA-Seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
0
replies
6.9k
views
Answer: C: Salmon tximport get TPM
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
972
views
Comment: C: how to identify gene expression and genes responsible for virulence
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
4
replies
1.9k
views
Answer: A: Do varying amounts of input RNA for library preperation have an effect on differ
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
0
replies
1.9k
views
Comment: C: Do varying amounts of input RNA for library preperation have an effect on differ
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.9k
views
Comment: C: Is there a good way to do a PCA of gene expression including samples from differ
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
0
replies
1.9k
views
Answer: A: Is there a good way to do a PCA of gene expression including samples from differ
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
3.4k
views
Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
1.1k
views
Answer: A: Feature selection for differential analysis
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
976
views
Comment: C: transcript assembling problem by cufflinks
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
976
views
Comment: C: transcript assembling problem by cufflinks
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.4k
views
Answer: A: Can you choose minimum transcript coverage in salmon
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
3.4k
views
Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
3.4k
views
Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
3.4k
views
Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.5k
views
Comment: C: Can I perform differential gene expression with samples from Poly-A and Ribo-dep
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
12k
views
Comment: C: How to normalized TPM with TMM method?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
12k
views
Comment: C: How to normalized TPM with TMM method?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
3.2k
views
Comment: C: how to caculate effective length for RNA sequencing?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
3.2k
views
Comment: C: how to caculate effective length for RNA sequencing?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
1
reply
12k
views
Comment: C: How to normalized TPM with TMM method?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
1.4k
views
Answer: A: Suggestions for avoiding False Positives while identifying differentially expres
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
votes
1
reply
4.6k
views
Answer: A: Why run FeatureCounts after Stringtie? (Galaxy recommends!)
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
3.4k
views
Answer: A: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
1.5k
views
Answer: A: Any database with RNA-Seq signal files for GTEx data?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
votes
0
replies
3.4k
views
Comment: C: Best way to address different batches of RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
vote
1
reply
804
views
Comment: C: Alternative first exon annotation database
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
489 results • Page 3 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6