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Answer: Answer: IsoformSwitchAnalyserR lmportR data warning.
10 months ago by Kristoffer Vitting-Seerup ★ 4.0k
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2
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870
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Answer: Answer: switchAnalyzeRlist conditions reversed
20 months ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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757
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Answer: Answer: IsoformSwitchAnalyzer is not accepting CPAT result file
21 months ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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0
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521
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Answer: Answer: Alternative splicing in gencode annotations
2.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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924
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Answer: Answer: Any tool to detect differential splicing of a gene between samples?
2.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.1k
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Answer: Answer: novel AS events detection from RNA seq
2.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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1
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1.8k
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Answer: A: Quantify Isoforms in RNA-Seq data
3.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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2.2k
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Answer: A: Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.2k
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Answer: A: Resolving expression profiles of genes with same name but different MSTRG ID
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.5k
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Answer: A: I get different ENSG IDs for the same MSTRG ID
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.0k
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Answer: A: Stringie output doesn't have any gene names!
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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5.2k
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Answer: A: gene IDs in stringtie output
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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2.0k
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Answer: A: StringTie --merge creates the same id for neighbouring genes
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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2.5k
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Answer: A: StringTie - A transcript matching to multiple genes
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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19k
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Answer: A: How to deal with MSTRG tag without relevant gene name?
3.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.0k
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Answer: A: Normalization for comparing expression statistics across sample and gene groups
3.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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1.0k
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Answer: A: Ribo-seq data analysis using an RNA-Seq analysis pipeline
3.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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1.6k
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Answer: A: Alternative Splicing detection and tools (Kallisto, sleuth, isoformSwitchAnalyze
3.9 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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1.6k
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Answer: A: differential expression with cuffdiff
3.9 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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2.7k
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Answer: A: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
3.9 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.2k
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Answer: A: Merged vs. Ensembl GTF for htseq-count
3.9 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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678
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Answer: A: what should I do first: transciptome annotation or DE analysis?
3.9 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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0
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7.9k
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Answer: C: Why 'filterByExpr' does not eliminate low read counts from the expression data?
4.0 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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1.3k
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Answer: A: cufflinks result interpretation
4.0 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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1.2k
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Answer: A: how to know the isoform length and exon number of particular gene from rna sampl
4.0 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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1.1k
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Answer: A: Infer strandedness of my single-end RNA-Seq data
4.0 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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2.4k
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Answer: A: Stringtie duplicate transcripts
4.1 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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662
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Answer: A: StringTie required filtered BAM
4.1 years ago by Kristoffer Vitting-Seerup ★ 4.0k
4
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1
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1.0k
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Answer: A: Inter-RNAseq dataset operations?
4.1 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.6k
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Answer: A: DRIMSeq problems with dmPrecision
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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8.1k
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Answer: A: CPM or TPM in GSEA analysis
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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2.2k
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Answer: A: Event-based software for alternative splicing with three conditions?
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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934
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Answer: A: Incomplete Open Read Frames (ORFs) in Mikado annotation
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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0
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743
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Answer: A: Learning RNASeq Analysis using my own DATA that needs to be analyzed
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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1
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3.0k
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Answer: A: Calculating differential expression genes between two sample sequenced using 10x
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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0
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2.4k
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Answer: A: How to compare two sets of results from Limma?
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
4
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0
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2.2k
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Answer: A: The best tool for time course differential expression with R
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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1
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2.0k
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Answer: A: Plot normalized coverage across genes/transcripts in single cell rna seq data
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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1
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9.5k
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Answer: A: ANOVA for RNA-seq data?
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.0k
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Answer: A: Some problems with DEXSEQ analyse
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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2
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1.1k
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Answer: A: Packages in R for analyze premature stop codon and GC contents
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.3k
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Answer: A: How can I get true transcript_ids from StringTie?
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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1.1k
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Answer: A: Validation tools in bioinformatics
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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4.1k
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Answer: A: Thousands of significant differentially expressed genes but no significant enric
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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2.6k
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Answer: A: Best way to find novel non-coding transcripts from stranded RNA-seq data
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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4.3k
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Answer: A: any tool or R package for integrated analysis of miRNA and mRNA expression data
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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1.4k
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Answer: A: SAM flags needed for paired-end strand-specific differential expression
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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0
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814
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Answer: A: is there any database that show RNA false positive?
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.3k
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Answer: A: Extract Transcript sequence from fastq file (Plant RNA-Seq data)
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.0k
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Answer: A: how should i filter the TCGA data to find the time series data in normal tussue
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
223 results • Page 1 of 5
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