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Showing :
answers
4
votes
1
reply
4.9k
views
Answer:
A: Seurat Cell Cycle Phase Assignments
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
3.1k
views
Answer:
A: Error while loading the data structrure in the ballgown tool
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.0k
views
Answer:
A: Need help to do single denovo assembly with multiple RNA seq data
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
0
replies
1.7k
views
Answer:
A: Reasons to refuse to give support
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
6.2k
views
Answer:
A: Plot normalized counts DESeq or TPM?
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
2.5k
views
Answer:
A: Transcript differential exprs analysis using Kallisto not significant
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
2.5k
views
Answer:
A: Transcript differential exprs analysis using Kallisto not significant
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
2.2k
views
Answer:
A: what does the positive or negative of PSI means
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.9k
views
Answer:
A: Why are transcripts of a same gene expressed differently in same samples?
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
4.5k
views
Answer:
A: Which normalization method to use FPKM/TPM?
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
4.4k
views
Answer:
A: Smart-seq2 single-cell RNA-Seq
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
1.9k
views
Answer:
A: transcriptome with and without reference genome
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
0
replies
1.1k
views
Answer:
A: about cuffdiff input and parameters
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
4.9k
views
Answer:
A: Total RNA-Seq vs mRNA-Seq
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
2.5k
views
Answer:
A: How to compulate the FPKM of differentially expressed transcripts (DETs)
5.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
0
replies
846
views
Answer:
A: Correlating putative enhancer elements with gene expression
5.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
6
votes
0
replies
109k
views
Answer:
A: Fold change - a final explanation
5.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
1.4k
views
Answer:
A: find major transcript from a specific tissue
5.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
3.1k
views
Answer:
A: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
5.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.4k
views
Answer:
A: Single vs paired ends in quantification
5.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.2k
views
Answer:
A: How to know favorite and unfavorite for survival analysis programmly?
5.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
7.3k
views
Answer:
A: Run htseq-count with multiple sam files?
5.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
4.2k
views
Answer:
A: Error for reading .gtf file in R
6.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
4
votes
1
reply
5.1k
views
Answer:
A: Alternative splicing analysis following kallisto?
6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
4.7k
views
Answer:
A: what are gene ratio and bg ratio in differentially expressed gene enrichment ana
6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
63k
views
Answer:
A: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
4.1k
views
Answer:
A: Any Promising Addition to Alternative Splicing Detection tools for Rna-Seq Data
6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
9.6k
views
Answer:
A: Summary of alternative splicing from Cufflinks
6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
4.7k
views
Answer:
A: workflow/tool for alternative splicing
6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
2
replies
1.3k
views
Answer:
A: available subcutaneous adipose RNA-seq
6.3 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
2
replies
5.5k
views
Answer:
A: Exon coordinates and sequence
6.3 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
0
replies
1.7k
views
Answer:
A: RNA-Seq data avaliability online
6.3 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.8k
views
Answer:
A: Quantifying mRNA level
6.3 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
2.8k
views
Answer:
A: How to find common alternative splicing events or novel transcripts among differ
6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
8.8k
views
Answer:
A: Coordinates for Transcription Start Site (TSS)
6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.8k
views
Answer:
A: A Theoretical Question About RNA-Seq Normalization
6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
2.4k
views
Answer:
A: exon skipping and RNA-Seq
6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
5.8k
views
Answer:
A: Plotting TSS & TTS for Chip-seq peaks
6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.9k
views
Answer:
A: cummeRbund grouping by TSS / CDS / Isoforms
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
3.2k
views
Answer:
A: Different coverage on RNA-Seq strands
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.4k
views
Answer:
A: How to take sum of cells in a dataframe based on another column
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.9k
views
Answer:
A: Finding RNA sequences for a list of genes
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
6.7k
views
Answer:
A: Alternative splicing: explanation about delta psi values
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
3.8k
views
Answer:
A: which option is better for DESeq2 analysis: salmon or htseq-count?
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
2.2k
views
Answer:
A: SpliceR visualization tool
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.0k
views
Answer:
A: Can spliceR be used to classify the AS events for denovo transcripts?
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
3.0k
views
Answer:
A: Stringtie and Cufflinks and Cuffmerge
6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
2.6k
views
Answer:
A: Fantom5 enhancers to TSS_distance
6.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.9k
views
Answer:
A: Enhancer distance cutoff
6.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
4.7k
views
Answer:
A: Differential Gene Expression Analysis using data_RNA_Seq_v2_expression_median RS
6.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
223 results • Page
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