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Comment: C: Can I perform de novo analysis on RNA seq file of Mus musculus?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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4.4k
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Comment: C: How does monocle identify the begging of pseudotime?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3.1k
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Comment: C: De novo transcriptome assembly produce too many transcripts
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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2.4k
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Comment: C: Stringtie elimination of important transcripts
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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2.4k
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Comment: C: Stringtie elimination of important transcripts
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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2.4k
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Comment: C: Stringtie elimination of important transcripts
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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2.4k
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Comment: C: Stringtie elimination of important transcripts
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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10k
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Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.3k
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Comment: C: GETx patient RNA_Seq read count download
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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3.9k
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Comment: C: Is it fine to run SVM on RNA-seq read counts?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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2.1k
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Comment: C: batch effect in RNAseq analysis using tophat cufflinks pipeline
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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9.9k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.0k
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Comment: C: scRNA-seq gene expression gradient onto tSNE plot
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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9.9k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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2.3k
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Comment: C: Extremely important marker gene has many reads based on IGV viewer but no quanti
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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794
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Comment: C: Estimating individual batch factors
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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2.6k
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Comment: C: How to deal with large inter-sample variation when using GTEx RNA-seq data?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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2.6k
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Comment: C: How to deal with large inter-sample variation when using GTEx RNA-seq data?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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721
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Comment: C: How to obtain mRNA splicing variants for a given chromosomal position?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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2.5k
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Comment: C: How to perfectly use transcript merge method of various software like stringtie?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.4k
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Comment: C: Identifiyng mutual trends between treatments
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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6.6k
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Comment: C: Alternative splicing: explanation about delta psi values
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.9k
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Comment: C: Transforming RNA-seq data- (tpms) - what is the best practice for dealing with z
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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6.0k
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Comment: C: FPKM quantile normalization
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.4k
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Comment: C: Suggestions needed for mIRNA-human target prediction ?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.4k
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Comment: C: Suggestions needed for mIRNA-human target prediction ?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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6.0k
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Comment: C: FPKM quantile normalization
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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2
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3.2k
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Comment: C: STAR Splice Junctions normalization
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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2.5k
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Comment: C: Tools for Saturation analysis and gene body coverage analysis
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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4.3k
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Comment: C: RSEM: The reference contains no transcripts!
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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3.3k
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Comment: C: Analysis Without Replicates
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.1k
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Comment: C: Is Kallisto good for identifying non-coding RNA in a RNAseq data?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.1k
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Comment: C: Is Kallisto good for identifying non-coding RNA in a RNAseq data?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
4
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1
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8.0k
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Comment: C: How to deal with the case that one gene symbol matches multiple ensembl ids?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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1.9k
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Comment: C: How to identify RNA-seq mapped reads to reference genome but not identified by f
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.4k
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Comment: C: Why is my features different between featurecounts and cuffnorm?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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889
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Comment: C: Statistical comparison of expression of two _different_ genes
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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1.4k
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Comment: C: Why is my features different between featurecounts and cuffnorm?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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3.3k
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Comment: C: How to merge quality trimmed interlaced reads?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.2k
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Comment: C: Finding TSS on genome
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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4.9k
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Comment: C: estimating read length and SD for Kallisto (single-end QuantSeq reads)
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.5k
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Comment: C: Cluster samples based on expression of a subset of genes
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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1.5k
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Comment: C: Cluster samples based on expression of a subset of genes
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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3.3k
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Comment: A: RNA-seq alignment rate is too low.
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.4k
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Comment: C: voom variance modeling: lowess curve fitting notation wrong?
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.3k
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Comment: C: RNA-seq alignment rate is too low.
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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870
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Comment: C: Can remote, but same type, tissue be used as RNA-Seq normal control for tumor st
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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2.9k
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Comment: C: Unable to create file for tximport
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.1k
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Comment: C: Error while loading the data structrure in the ballgown tool
5.4 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.1k
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Comment: C: Error in prepDE.py in Tuxedo protocol after StringTie quantification
5.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
258 results • Page 4 of 6
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