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User: dompearcejankowski

gravatar for dompearcejankowski
Reputation:
10
Status:
New User
Location:
United Kingdom
Last seen:
1 year, 7 months ago
Joined:
5 years, 10 months ago
Email:
d*****************@gmail.com

Posts by dompearcejankowski

<prev • 6 results • page 1 of 1 • next >
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Comment: A: GISTIC 2.0.23 error
... For anyone still struggling with this error - I had removed the sex chromsomes at an earlier point of the analysis. Whilst it seemed I had at least some coverage in all samples there was obviously none in Chr23, causing the error. Be sure to plot your segments per-sample, per-chromosome to ensure ...
written 20 months ago by dompearcejankowski • 10
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Comment: C: CNV Segmentation density - non-zero?
... Thanks a lot, really appreciated ...
written 20 months ago by dompearcejankowski • 10
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CNV Segmentation density - non-zero?
... Hi All, tl;dr my segment means look odd https://imgur.com/a/5yOTodf I'm analysing Illumina CytoSNP 850k data, that has been pre-processed as a (I believe) combination of Genome Studio and BlueFuse. Confusingly to me, when the distribution of log2 segment means (i.e. the "copy number") are visual ...
genome cytosnp copy number snp cnv written 20 months ago by dompearcejankowski • 10 • updated 20 months ago by markus.riester • 510
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Answer: A: GSEA For Paired Microarray Data
... Hi Mo, Thanks for your reply, though I believe my question still stands. That question is - is there a method for GSEA that takes into account paired/matched data? That question is not - how do I perform GSEA? Google is woefully unhelpful on this occasion   Ostensibly I believe I'm asking a si ...
written 5.8 years ago by dompearcejankowski • 10
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GSEA For Paired Microarray Data
... Hi, I'd like to carry out a gene set enrichment analysis using paired samples (before and after treatment samples from the same patient) but I'm having trouble finding any method, software or R package to accomplish this. Can anyone highlight the best way to go about this analysis? Much appreciat ...
enrichment paired pair matched gsea written 5.8 years ago by dompearcejankowski • 10 • updated 5.1 years ago by Gordon Smyth • 2.1k
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Answer: A: Pathway Analysis For Paired Microarray Data & Paired Rna-Seq Data?
... Hi Michael, did you ever reach a solution to your question? I'm in a similar boat right now though there doesn't seem to have been any progress in this regard in the last 23 months!   Much appreciated, Dominic ...
written 5.8 years ago by dompearcejankowski • 10

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Popular Question 5.8 years ago, created a question with more than 1,000 views. For GSEA For Paired Microarray Data
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