User: mjt.professional

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Posts by mjt.professional

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Comment: C: RPMM blc() function not completing?
... I'll give that a shot.  This is rather maddening as it's hanging somewhere deep in the code dependencies and seems to depend on the random seeding of the core optimization routine. ...
written 3.8 years ago by mjt.professional0
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RPMM blc() function not completing?
...   Hello, I don't see many questions on the forum regarding the RPMM package.  In particular, I am using the BMIQ script/method to normalize the Type 2 probes on the Illumina 450K DNA methylation chip.  This procedure uses a piece-wise beta distribution fitting procedure to then recalculate methyla ...
dna methylation rpmm mixture model written 3.8 years ago by mjt.professional0 • updated 3.8 years ago by andrew.j.skelton735.8k
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ICGC/TCGA clinical data. Specimen_interval longer than donor survival time?
... Suppose one wanted to do survival analysis on any of the variety of data available through ICGC/TCGA. Looking through the clinical information, I notice that in many cases the "specimen interval" (time interval from primary diagnosis to sample collection) is longer than the donor survival time (tim ...
icgc tcga survival analysis specimen time written 4.4 years ago by mjt.professional0 • updated 2.0 years ago by Biostar ♦♦ 20

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