User: Apricimo

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Apricimo0
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Posts by Apricimo

<prev • 8 results • page 1 of 1 • next >
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(Closed) CHO Overexpression cell line
... ATCC has two CHO cells lines and I don't know which ones are good for overexpression of proteins. Would love some guidance from those that have experience. The two cell line ATCC numbers are CRL-9618 and CCL-61. Thank you in advance. ...
cho overexpression cell lines written 2.2 years ago by Apricimo0
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Relatedness Analysis of mRNA Levels in Cell Lines
... I would like to do a "relatedness" (a tree diagram) analysis based on RNA-seq or microarray expression levels (Exp. A B C) with different cell lines (A, B and C). Gene ID Exp.-A Exp.-B Exp.-C Gene A 40 50 20 Gene B 100 90 30 ...
bioinformatics phylogenetics rna-seq R written 3.2 years ago by Apricimo0
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Kaplan Meier Hazard Ratio
... I need to find the highest hazard ratio for a particular cancer for a particular gene. For example, I want to find out which gene in the human genome corresponds to the poorest clinical outcome for lung cancer. I've used cBioportal but using this databse I need to enter a specific gene and then I ...
hazard ratio kaplan meier cancer written 3.4 years ago by Apricimo0 • updated 9 months ago by joldare10
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Answer: A: OMA Orthology Error Message
... Thank you. Luckily the species I was interested in are found on the web server and I analysed my data already but this is good to know for reference.   http://omabrowser.org/oma/genomePW/ ...
written 4.3 years ago by Apricimo0
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Answer: A: Cross Species Orthologues
... This is exactly the kind of thing I needed.   http://omabrowser.org/oma/genomePW/   Preferred ID is to use protein names used by kegg "Source ID" ...
written 4.3 years ago by Apricimo0
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OMA Orthology Error Message
... Got this error while running OMA for aligning three fasta files with protein sequences   Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed   anyone know what this means and how to resolve it? ...
genome software error oma alignment blast written 4.3 years ago by Apricimo0
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Cross Species Orthologues
... Hello all,   I want to compare protein (amino acid) sequences of two organisms on a genome scale. That is, if I have organism A with 10 proteins (hypothetical) and another organism B with 10 proteins I would like to see what proteins in B are orthologues to A based on sequence identity/similarity. ...
gene alignment sequence blast genome written 4.3 years ago by Apricimo0
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Answer: A: Different bacteria RNA seq data
... http://www.ncbi.nlm.nih.gov/sites/GDSbrowser ...
written 4.4 years ago by Apricimo0

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