User: alpha09

gravatar for alpha09
alpha0910
Reputation:
10
Status:
New User
Location:
Norway
Last seen:
5 months ago
Joined:
5 years, 4 months ago
Email:
k***********@gmail.com

Posts by alpha09

<prev • 13 results • page 1 of 2 • next >
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RNA velocity arrows means
... I want to know how arrows are generated in RNA velocity? I read papers but I didn't get clear view of it. Second thing, can I apply RNA Velocity on the data that has no time points? I have data on adult stage of a species. Thanks in advance. ...
R tool rna-seq written 5 months ago by alpha0910 • updated 4 months ago by Kevin Blighe63k
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Sub_Population using 10X Loupe browser
... I have scRNA-Seq data. I anticipated different clusters using "Loupe Browser". Now I made my own cluster in loupe, I am interested in finding sub_populations within this cluster. Afterward to find genes associated with these clusters. ...
10x written 10 months ago by alpha0910 • updated 10 months ago by genomax87k
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Pipeline for scRNA-Seq
... I am developing a pipeline for Pituitary of fish by using Single cell transcriptomics. I need help in normalization method. I am also working on "Scater" R package. There is no Spike-In or UMI in my data. ...
R forum next-gen rna-seq written 2.8 years ago by alpha0910 • updated 2.8 years ago by Pierre Lindenbaum129k
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Comment: C: RNA Normalization from DESeq to RPKM
... Thank You Devon. ...
written 4.8 years ago by alpha0910
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Comment: A: RNA Normalization from DESeq to RPKM
... Thank You so much. It helped me a lot ...
written 4.8 years ago by alpha0910
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Comment: A: RNA Normalization from DESeq to RPKM
... Total gene read counts were normalized on library size using DESeq method (size factor) ``` Feature_ID M1_1 M1_2 M2_1 M2_2 M3_1 M3_2 M4_1 M4_2 M5_1 M5_2 M6_1 ...
written 4.8 years ago by alpha0910 • updated 8 months ago by RamRS28k
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RNA Normalization from DESeq to RPKM
... I have RNA Seq DESeq normalized data.I want to convert it into RPKM. kindly let me know what should I do? Any R package etc. Thank You. ...
R next-gen rna-seq written 4.8 years ago by alpha0910
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Answer: A: Transcription Factor (TF) sequence extraction +/- 2000 of Arabidopsis thaliana
... yes I have names and motif.   ...
written 5.0 years ago by alpha0910
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Comment: C: Differentailly expressed genes of microarray time series data with replicates...
... okay thank you. I got it. ...
written 5.0 years ago by alpha0910
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(Closed) Differentailly expressed genes of microarray time series data with replicates...
... I have micro array data which RMA normalized.I want to extract differentially expressed genes. My data is times series and with replicates.below is the format of my data..(0,4,8,12,16,20) is one day expression and (24,28,32,36,40,44) is 2nd day. Gene_ID LDT0 LDT4 8 12 16 ...
gene R next-gen sequence written 5.0 years ago by alpha0910

Latest awards to alpha09

Popular Question 2.8 years ago, created a question with more than 1,000 views. For Gene Network construction
Popular Question 4.7 years ago, created a question with more than 1,000 views. For Gene Network construction
Popular Question 4.7 years ago, created a question with more than 1,000 views. For RNA Normalization from DESeq to RPKM

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