User: dina.hesham139

gravatar for dina.hesham139
Reputation:
120
Status:
Trusted
Location:
Egypt
Last seen:
4 months, 3 weeks ago
Joined:
4 years, 7 months ago
Email:
d*************@gmail.com

Posts by dina.hesham139

<prev • 51 results • page 1 of 6 • next >
0
votes
0
answers
187
views
0
answers
Comment: C: IsoformSwitchAnalyzeR and cuffdiff data error
... Nope, I rewrote the path and still getting the same error. ...
written 4 months ago by dina.hesham139120
1
vote
0
answers
187
views
0
answers
IsoformSwitchAnalyzeR and cuffdiff data error
... Hi, I got this error while trying to analyze cuffdiff data with IsoformSwitchAnalyzeR: > testSwitchList <- importCufflinksFiles( > + pathToGTF = 'D:/ETMR/ETMR_PNET_NORMAL_cuffdiff/merged.gtf', > + pathToGeneDEanalysis = 'D:/ET ...
isoformswitchanalyzer rna-seq written 4 months ago by dina.hesham139120 • updated 4 months ago by kristoffer.vittingseerup2.6k
0
votes
1
answer
345
views
1
answers
Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
... I will try Thank you! ...
written 6 months ago by dina.hesham139120
0
votes
1
answer
345
views
1
answer
Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
... Hi, I 'm trying to analyze my kallisto data with IsoformSwitchAnalyzeR but I get this error when I use the importRdata function, I get this error: > aSwitchList <- importRdata( + isoformCountMatrix = mySwitchList$counts, + isoformRepExpression = mySwitchList$abundance, + ...
isoformswitchanalyzer rna-seq written 6 months ago by dina.hesham139120 • updated 4 months ago by harry0
0
votes
2
answers
1.8k
views
2
answers
Comment: C: Alternative splicing analysis following kallisto?
... Hi kristoffer, I 'm trying to analyze my kallisto data with IsoformSwitchAnalyzeR but I get this error when I use the importRdata function, I get this error: > aSwitchList <- importRdata( + isoformCountMatrix = mySwitchList$counts, + isoformRepExpression = mySwitchList$abund ...
written 6 months ago by dina.hesham139120
0
votes
0
answers
270
views
0
answers
Astalavista landscape AS gtf file output
... Hi, Have anyone tried Astalavista for alternative splicing analysis? If yes, how do I proceed after obtaining the LandscapeAS.gtf file? Thanks in advance! ...
astalavista rna-seq written 16 months ago by dina.hesham139120
0
votes
0
answers
516
views
0
answers
Comment: C: ASPLI (RNAseq AS) R package error
... bam files ranges 6-8gb. I analyze 2 at a time I used windows at first of 8gb RAM. Then I analyzed the data using a macbook pro 256, 2.3 GHz, 8 GB RAM. Also, gave me a memory error! ...
written 16 months ago by dina.hesham139120
0
votes
0
answers
516
views
0
answers
ASPLI (RNAseq AS) R package error
... Hi, I'm using ASPLI (An integrative R package for analysing alternative splicing) to study RNAseq data. Whenever I try to load the bam files I get this error: Error in value[[3L]](cond) : 'Realloc' could not re-allocate memory (167772160 bytes) file: WT_C1.bam index: NA Any ...
R rna-seq aspli written 16 months ago by dina.hesham139120 • updated 16 months ago by RamRS24k
0
votes
2
answers
1.8k
views
2
answers
Comment: C: Alternative splicing analysis following kallisto?
... Thanks alot Istvan ! What other pipeline would you recommend for studing alternative splicing? esp. for rice and in my case I have a condition that doesn't have a replicate (i.e. I can't use rMATS for example!)? ...
written 19 months ago by dina.hesham139120
0
votes
0
answers
550
views
0
answers
AStalavista for rice alternative splicing analysis?
... Hi, Did anyone try AStalavista for alternative splicing analysis, esp.for rice RNASeq data? Does it manage to work if one of the conditions doesn't have a replicate? (a major drawback to rMATS!!) Is there a tutorial to follow? Thanks in advance! ...
rna-seq alternative splicing written 19 months ago by dina.hesham139120

Latest awards to dina.hesham139

Epic Question 16 months ago, created a question with more than 10,000 views. For HISAT2 command help
Popular Question 16 months ago, created a question with more than 1,000 views. For Annotation file (gff3) for hg38 to be used with MISO
Popular Question 16 months ago, created a question with more than 1,000 views. For From HISAT2 to cuffdiff?
Popular Question 16 months ago, created a question with more than 1,000 views. For Can I use sorted bam files from STAR with Stringtie?
Popular Question 16 months ago, created a question with more than 1,000 views. For RNAseq of total RNA
Popular Question 16 months ago, created a question with more than 1,000 views. For Annotation file (gff3) for hg38 to be used with MISO
Popular Question 17 months ago, created a question with more than 1,000 views. For Annotation file (gff3) for hg38 to be used with MISO
Epic Question 17 months ago, created a question with more than 10,000 views. For HISAT2 command help
Popular Question 18 months ago, created a question with more than 1,000 views. For Annotation file (gff3) for hg38 to be used with MISO
Popular Question 20 months ago, created a question with more than 1,000 views. For Annotation file (gff3) for hg38 to be used with MISO
Popular Question 21 months ago, created a question with more than 1,000 views. For Annotation file (gff3) for hg38 to be used with MISO
Popular Question 23 months ago, created a question with more than 1,000 views. For From HISAT2 to cuffdiff?
Popular Question 23 months ago, created a question with more than 1,000 views. For Is there a way to add xs tag to a sam file?
Great Question 2.7 years ago, created a question with more than 5,000 views. For HISAT2 command help
Great Question 2.7 years ago, created a question with more than 5,000 views. For hg38 annotation file (gtf) UCSC format
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Is there a way to add xs tag to a sam file?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Can I use sorted bam files from STAR with Stringtie?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For HISAT2 command help
Popular Question 3.4 years ago, created a question with more than 1,000 views. For HISAT2 command help
Popular Question 3.5 years ago, created a question with more than 1,000 views. For HISAT2 command help

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1795 users visited in the last hour