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- 4 years, 1 month ago
I'm a graduate student in Bioinformatics at the University of Illinois, working on the red fox genome assembly.
Posts by rando2
... Hello! Have you tried looking at the documentation for the translate function? I believe [this resource] will help you troubleshoot. Specifically, for the problem you described, you should be able to specify the character that represents a gap. So in your case, this would be: df['prot'] = pd.Se ...
... I had the same issue as you, and I think I figured out a way to re-integrate the mapthin output. Assuming that, as described above, you ran mapthin as "mapthin -b 20 snp.bim snp-thin.bim" You can then run the following to reformat the sites in your original bfile according to the mapthin output: p ...
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