User: rando2

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rando220
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New User
Location:
United States
Last seen:
1 day, 18 hours ago
Joined:
4 years, 1 month ago
Email:
r*****@illinois.edu

I'm a graduate student in Bioinformatics at the University of Illinois, working on the red fox genome assembly.

Posts by rando2

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Answer: A: How to deal with gaps during translation with biopython
... Hello! Have you tried looking at the documentation for the translate function? I believe [this resource][1] will help you troubleshoot. Specifically, for the problem you described, you should be able to specify the character that represents a gap. So in your case, this would be: df['prot'] = pd.Se ...
written 20 days ago by rando220
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Comment: C: LD-decay in a r2 vs distance(cm) plot
... I had the same issue as you, and I think I figured out a way to re-integrate the mapthin output. Assuming that, as described above, you ran mapthin as "mapthin -b 20 snp.bim snp-thin.bim" You can then run the following to reformat the sites in your original bfile according to the mapthin output: p ...
written 4 weeks ago by rando220

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