User: e.rempel

gravatar for e.rempel
e.rempel980
Reputation:
980
Status:
Trusted
Location:
Germany, Heidelberg
Last seen:
2 days, 10 hours ago
Joined:
5 years, 9 months ago
Email:
e*******@dkfz-heidelberg.de

Statistician/bioinformatician.

Posts by e.rempel

<prev • 120 results • page 1 of 12 • next >
0
votes
0
answers
48
views
0
answers
Comment: C: About shiny HTML issues
... Sorry, but this is just not enough information. Furthermore, I think, it is more helpful to post this question on stackoverflow. ...
written 5 days ago by e.rempel980
0
votes
1
answer
205
views
1
answers
Answer: A: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command
... So there are two possibilities: - using absolute path to bedGraphToBigBig: /opt/anaconda3/bin/bedGraphToBigWig - (better one) add /opt/anaconda3/bin to your PATH (look [this link][1]) [1]: https://unix.stackexchange.com/a/26059 ...
written 7 weeks ago by e.rempel980
0
votes
1
answer
205
views
1
answers
Comment: C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command
... Interesting that your conda was apparently installed in /opt. One more thing: could you run find / -name 'bedGraphToBigWig' You will receive a lot of *Operation not permitted* but if bedGraphToBigWig is installed, we will see where it is. Then we have to adjust your $PATH. ...
written 7 weeks ago by e.rempel980
0
votes
0
answers
724
views
0
answers
Comment: C: Error in UseMethod("select_") : no applicable method for 'select_' applied to
... So, your solution was to downgrade R and according packages? ...
written 7 weeks ago by e.rempel980
0
votes
1
answer
158
views
1
answers
Answer: A: TopGO: how to select specific genes from the bacgkround for the analysis
... Hi Oli, you could specify *allGenes* as a factor (length equals number of significant genes in the *background*). This factor equals 1 if the gene is also in * interesting_genes* and 0 otherwise. background_genes = names(background)[background <= 0.05] int.genes <- factor(as.integer( ...
written 7 weeks ago by e.rempel980
0
votes
1
answer
205
views
1
answers
Comment: C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command
... This is really strange, I tried on my computer conda install -c bioconda ucsc-bedgraphtobigwig and it worked. It was installed in ~/miniconda3/bin and I could execute "bedGraphToBigWig". One thing you could try (sorry, maybe you have checked it already) whether the path to your conda is in the ...
written 7 weeks ago by e.rempel980
0
votes
1
answer
205
views
1
answers
Comment: C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command
... From the top of my head, try ucsc Followed by TAB button. It could be that the installed commands have “ucsc” prefix ...
written 7 weeks ago by e.rempel980
1
vote
0
answers
114
views
0
answers
Comment: C: SnpSift case control command for multiple samples
... Just a few remarks: - if you use for loop in one line, the syntax should be different and contain semicolons. Otherwise, you could use indentations. - if I am not mistaken, the usual input for caseControl is a vcf file with multiple samples in it (meaning multiple sample columns in the vcf file). ...
written 8 weeks ago by e.rempel980
0
votes
2
answers
218
views
2
answers
Comment: C: GOseq gene2cat format errors
... > I tried the reverse, split(df$GO, df$GO) is just a typo, right? You have tried split(df$GO, df$gene_id)? ...
written 8 weeks ago by e.rempel980
0
votes
1
answer
360
views
1
answers
Comment: C: How do I add circles to the tips of a phylogenetic tree that have white fill and
... Please, be more elaborate, e.g. provide the code you have tried, the error messages you have obtained, and so on. You would not expect a person to spend more time on the answer than you have spent on writing the question, would you? ...
written 8 weeks ago by e.rempel980

Latest awards to e.rempel

Scholar 9 weeks ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: How to create a design matrix for Cpg.annotate?
Centurion 7 months ago, created 100 posts.
Scholar 7 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How to create a design matrix for Cpg.annotate?
Scholar 7 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: GO analysis using topGO Arabidopsis
Scholar 8 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: How to create a design matrix for Cpg.annotate?
Pundit 16 months ago, created a comment with more than 10 votes. For C: Pheatmap error: 'gpar' element 'fill' must not be length 0 , what to do about
Popular Question 16 months ago, created a question with more than 1,000 views. For bcl2fastq creates only Undetermined fastq
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: GO analysis using topGO Arabidopsis
Scholar 23 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 2.3 years ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Appreciated 2.9 years ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 3.2 years ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Appreciated 3.4 years ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 3.4 years ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Scholar 3.4 years ago, created an answer that has been accepted. For A: Heatmap.2 giving specific color to a value and start gradient after
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Supporter 3.4 years ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1065 users visited in the last hour
_