User: e.rempel

gravatar for e.rempel
e.rempel610
Reputation:
610
Status:
Trusted
Location:
Germany, Heidelberg, COS
Last seen:
5 days ago
Joined:
2 years, 10 months ago
Email:
e*******@dkfz-heidelberg.de

Statistician/bioinformatician.

Posts by e.rempel

<prev • 85 results • page 1 of 9 • next >
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Comment: C: Submission of RNA-seq data in NCBI Sequence Read Archive (SRA)
... Please, consider upvoting ("thumbs up") or accepting the answer, if it clarifies the issue for you. ...
written 18 days ago by e.rempel610
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Comment: C: Getting MDSplot from Cufflinks data [cummeRbund]
... I am not a huge expert on cummeRbund, but it looks like you first extract the genes from `cuff` object, then you use them to create MDS-plot. Usually, the input for MDS (or PCA) is some rectangular data, e.g. genes in rows, samples in columns. For me it looks like you are using just "genes". Am I ri ...
written 18 days ago by e.rempel610
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Comment: C: scatter plot in ggplot2 two colour for two different condition
... Just hook your boss up on [biostars][1] ;) [1]: http://biostars.org ...
written 19 days ago by e.rempel610
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Comment: C: scatter plot in ggplot2 two colour for two different condition
... So, what should colour represent? I honestly don't get it. ...
written 19 days ago by e.rempel610
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Answer: A: try command in R
... Hi, quick Google search redirected me to the [book][1] of Hadley Wickham. Here he suggests: > To pass larger blocks of code to try(), wrap them in {}: try({ a <- 1 b <- "x" a + b }) HTH [1]: http://adv-r.had.co.nz/ ...
written 19 days ago by e.rempel610
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Comment: C: (ERR): bowtie2-align exited with value 1
... Or use Homebrew to install Bowtie2. ...
written 27 days ago by e.rempel610
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Comment: C: File processing, arranging columns
... Nice one-liner. One question: You don't really nead `first=""` in the BEGIN statement? ...
written 8 weeks ago by e.rempel610
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Answer: A: Set multiple attributes to a single node in R
... Hi, is it a `data.frame`? I am asking because you said > I have a list of genes If it is a data.frame, you could just remove `[1]` from genes <- genes[!duplicated(genes[1]),] because `duplicated` can work on rows. ...
written 3 months ago by e.rempel610
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Answer: A: Heatmap.2 - flip dendrogram so control group appears on LHS?
... Hi, Kevin already posted about `reorder` function. In my previous [answer][1] I provided one example how to choose weights for specific branches in dendrogram. [1]: https://www.biostars.org/p/237067/#247980 ...
written 3 months ago by e.rempel610
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Comment: C: Heatmap with contour and numbers
... Honestly, I don't really understand the plot, much less explain how you could do something similar in R/Python. ...
written 3 months ago by e.rempel610

Latest awards to e.rempel

Scholar 3 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Appreciated 5 months ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 5 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Scholar 5 months ago, created an answer that has been accepted. For A: Heatmap.2 giving specific color to a value and start gradient after
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Scholar 6 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
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Scholar 6 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
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Appreciated 9 months ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
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