User: e.rempel

gravatar for e.rempel
e.rempel700
Reputation:
700
Status:
Trusted
Location:
Germany, Heidelberg, COS
Last seen:
1 month, 2 weeks ago
Joined:
3 years, 7 months ago
Email:
e*******@dkfz-heidelberg.de

Statistician/bioinformatician.

Posts by e.rempel

<prev • 88 results • page 1 of 9 • next >
0
votes
2
answers
4.5k
views
2
answers
Comment: C: aligning with STAR
... After depreciation of homebrew/science you have to use brew tab brewsci/science brew install rna-star ...
written 5 months ago by e.rempel700
1
vote
1
answer
306
views
1
answers
Comment: C: Clustering and extracting gene IDs with same expression profiles
... Hi, in the example from [Bioconductor][1] the object after **cutree** execution contains the genes with the cluster identifier (a number from one to n - an integer you have chosen for cutree). [1]: https://support.bioconductor.org/p/93424/ ...
written 8 months ago by e.rempel700
1
vote
2
answers
483
views
2
answers
Answer: A: On the significance of the overlap between lists of genes
... Hi, as you said, the p-value of Fisher's exact test is highly significant. The reason for this, as you have also said, is the size of gene's universe. I have seen some people making thoughts about the universe: can any random gene from these 17611 genes be selected in any of your lists? Sometimes ...
written 8 months ago by e.rempel700
0
votes
2
answers
360
views
2
answers
Comment: C: Submission of RNA-seq data in NCBI Sequence Read Archive (SRA)
... Please, consider upvoting ("thumbs up") or accepting the answer, if it clarifies the issue for you. ...
written 9 months ago by e.rempel700
0
votes
1
answer
346
views
1
answers
Comment: C: Getting MDSplot from Cufflinks data [cummeRbund]
... I am not a huge expert on cummeRbund, but it looks like you first extract the genes from `cuff` object, then you use them to create MDS-plot. Usually, the input for MDS (or PCA) is some rectangular data, e.g. genes in rows, samples in columns. For me it looks like you are using just "genes". Am I ri ...
written 9 months ago by e.rempel700
2
votes
1
answer
1.8k
views
1
answers
Comment: C: scatter plot in ggplot2 two colour for two different condition
... Just hook your boss up on [biostars][1] ;) [1]: http://biostars.org ...
written 9 months ago by e.rempel700
2
votes
1
answer
1.8k
views
1
answers
Comment: C: scatter plot in ggplot2 two colour for two different condition
... So, what should colour represent? I honestly don't get it. ...
written 9 months ago by e.rempel700
2
votes
1
answer
276
views
1
answers
Answer: A: try command in R
... Hi, quick Google search redirected me to the [book][1] of Hadley Wickham. Here he suggests: > To pass larger blocks of code to try(), wrap them in {}: try({ a <- 1 b <- "x" a + b }) HTH [1]: http://adv-r.had.co.nz/ ...
written 9 months ago by e.rempel700
1
vote
0
answers
2.5k
views
0
answers
Comment: C: (ERR): bowtie2-align exited with value 1
... Or use Homebrew to install Bowtie2. ...
written 9 months ago by e.rempel700
0
votes
3
answers
464
views
3
answers
Comment: C: File processing, arranging columns
... Nice one-liner. One question: You don't really nead `first=""` in the BEGIN statement? ...
written 10 months ago by e.rempel700

Latest awards to e.rempel

Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Appreciated 8 months ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 12 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Appreciated 14 months ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 14 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Scholar 14 months ago, created an answer that has been accepted. For A: Heatmap.2 giving specific color to a value and start gradient after
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Supporter 15 months ago, voted at least 25 times.
Scholar 15 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis
Scholar 15 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Scholar 15 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Pheatmap error: 'gpar' element 'fill' must not be length 0 , what to do about
Appreciated 18 months ago, created a post with more than 5 votes. For A: GO analysis using topGO Arabidopsis
Scholar 18 months ago, created an answer that has been accepted. For A: GO analysis using topGO Arabidopsis
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: GO analysis using topGO Arabidopsis

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1208 users visited in the last hour