User: sackettl

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sackettl20
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United States
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8 months, 3 weeks ago
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4 years, 4 months ago
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s*******@colorado.edu

Posts by sackettl

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Comment: C: Strange distribution of Fst values in BayeScan
... I did not ever find a solution to this. My only hypothesis is that the weird distribution may be somehow related to Wahlund effect / substructure in the data. I broke my populations into a couple of subpopulations and analyzed those separately. That worked for me, but it's not the best or most sat ...
written 8 months ago by sackettl20
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Strange distribution of Fst values in BayeScan
... I have used BayeScan (2.1) successfully several times on various subsets of a large SNP dataset that I am currently working on.  Recently, I tried to use it to infer outliers between several population pairs using my whole dataset (57,000 SNPs), and came up with a peculiar result in all 9 population ...
outliers bayescan snp fst written 3.9 years ago by sackettl20
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Comment: C: Vcftools Runs Of Homozygosity Option
... If I have interpreted the Auton et al. 2009 paper correctly, the algorithm will find ROH at least 1cM in length that have at least 50 SNPs.  Is the number of SNPs cumulative across individuals, such that 50 individuals could have a single (different) SNP in this region?  This is the only solution th ...
written 4.4 years ago by sackettl20

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Popular Question 3.8 years ago, created a question with more than 1,000 views. For Strange distribution of Fst values in BayeScan

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