User: mhucka

gravatar for mhucka
mhucka50
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Location:
California Institute of Technology
Website:
http://www.cds.caltech...
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mhucka
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2 months, 4 weeks ago
Joined:
3 years, 2 months ago
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Posts by mhucka

<prev • 7 results • page 1 of 1 • next >
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Comment: C: KEGG CONVERTER - KGML to SBML
... I've alerted one of the developers. Hopefully someone will get in touch with you. ...
written 3 months ago by mhucka50
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Answer: A: KEGG CONVERTER - KGML to SBML
... Hi, You didn't mention which KEGG translator you are trying to use. I'm aware of at least two. Are you using the one at http://www.cogsys.cs.uni-tuebingen.de/software/KEGGtranslator/ ? ...
written 3 months ago by mhucka50
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Answer: A: How to convert SBML or BioPAX format into KGML (KEGG) format
... I'm not aware of a ready-to-use tool to translate in this direction; however, the developers of [KEGGtranslator][1] tell me that internally, the software _does_ have the ability to read SBML and store it in an enhanced KGML form. KEGGtranslator is designed to read KGML and output SBML and other for ...
written 14 months ago by mhucka50
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Answer: A: Programmatic obtention of SBML from a list of proteins
... Hi, when you start to work with SBML more and have questions, please feel free to post them on the [SBML forums][1] or [email the SBML Team directly][2]. The team has set up monitors on Biostars.org for SBML-related questions, but we don't tend to subscribe to Biostars directly simply because it see ...
written 16 months ago by mhucka50
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Comment: C: The NIH Software Discovery Index | We invite your comments
... After that meeting report came out and the request for comments posted, I made a copy of the report in PDF format. It preserved all the content including images and comments posted by people on the web page. I've uploaded this PDF to [https://gist.github.com/mhucka/44921ea1e9a01697dbd0591d872b7b22][ ...
written 2.1 years ago by mhucka50
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Answer: A: Convert SBML to .sif for Cytoscape
... Unfortunately, I don't believe there is a converter that will generate .SIF files at this time. However, a plug-in for Cytoscape is available to read SBML files. It is called CySBML. Perhaps this will be sufficient for your needs? ...
written 2.6 years ago by mhucka50
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Answer: A: Tool to convert METATOOLS model file to SBML or .psc format
... This is not a complete answer, but I know that PySCeS has an interface to METATOOL — see http://pysces.sourceforge.net/docs/modules_doc.html and search for "metatool". PySCeS only seems to use METATOOL for certain calculations, but the fact that it can interface to it at all may mean that internally ...
written 3.2 years ago by mhucka50

Latest awards to mhucka

Scholar 16 months ago, created an answer that has been accepted. For A: Programmatic obtention of SBML from a list of proteins
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Programmatic obtention of SBML from a list of proteins

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