User: orange
orange • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- Korea, Republic Of
- Last seen:
- 7 months, 3 weeks ago
- Joined:
- 5 years, 9 months ago
- Email:
- 1*********@qq.com
Posts by orange
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2
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1
answer
1.6k
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1
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... hi,everyone
when I use minia 2.0.3 with kmer=141,it fail.But with kmer=127,it work!
So minia have kmer limit ?
...
0
votes
3
answers
1.5k
views
3
answers
... why not try SOAPdenovo instead of perl ? Did you not aseembly genome sequence before ?
...
written 5.5 years ago by
orange • 30
0
votes
9
answers
14k
views
9
answers
... hi，ScaffMatch support sam and fastq。
...
written 5.7 years ago by
orange • 30
2
votes
1
answer
1.2k
views
1
answer
... For bacteria assembly with pacbio reads, a unitig is easy at most time. But how to check if it is truly circual ?
I tried CA_best_edge_to_GML.py,and an error happen like "
Traceback (most recent call last):
File "CA_best_edge_to_GML.py", line 51, in
id1, lib_id, best5, o1, best3, o3 = l
ValueErr ...
1
vote
4
answers
3.1k
views
4
answers
Answer:
A: Tool for reducing contigs
... try AHA or PBjelly2 or sspace-longread for scaffoding .
...
written 5.8 years ago by
orange • 30
0
votes
1
answer
1.9k
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1
answers
... maybe you can try rabbit
...
written 5.8 years ago by
orange • 30
0
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2
answers
2.2k
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2
answers
... My firt thought is use SOAP2 to get diploid contigs,then use these contigs and PE reads to correct subreads ,inally use FALCON.
...
written 5.8 years ago by
orange • 30
1
vote
2
answers
2.2k
views
2
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... Hi,everyone.I have a project about 50M fungi diploid denovo assembly.I had assembly 37M fungi haploid with pacbio reads and illuminate and Miseq reads.For haploid genome, I used Ectool and HGAP3. But for diploid genome,I have doubt about how to correct subreads,and use which assembler .
And I have ...
0
votes
5
answers
2.1k
views
5
answers
Answer:
A: Post Genome Assembly
... when I click "ADD COMMENT " or "ADD REPLY"(color of the button is gray),but it didnot work ..someome tell me why ?
...
written 5.8 years ago by
orange • 30
1
vote
5
answers
2.1k
views
5
answers
Answer:
A: Post Genome Assembly
... Contiguator or Medusa seem to be based reference genome,so it is not denovo ...
...
written 5.8 years ago by
orange • 30
Latest awards to orange
Popular Question
4.1 years ago,
created a question with more than 1,000 views.
For check if one unitig is truly circual
Popular Question
4.2 years ago,
created a question with more than 1,000 views.
For fungi diploid genome denovo assembly by pacbio reads
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