User: AHW

gravatar for AHW
AHW40
Reputation:
40
Status:
New User
Location:
India
Last seen:
6 months, 3 weeks ago
Joined:
5 years, 5 months ago
Email:
h************@gmail.com

Posts by AHW

<prev • 56 results • page 1 of 6 • next >
0
votes
1
answer
226
views
1
answers
Comment: C: How to represent genotypes of form 1|1
... Thanks, it is not giving me anything like `AA, AB, BB`. It gives me two output files (.map, .ped), but not the information I am looking for. For example for SNP `rs10001 G T`, I would like to have something ` rs10001 G T, AB`. ...
written 8 months ago by AHW40
0
votes
1
answer
226
views
1
answers
Comment: C: How to represent genotypes of form 1|1
... Thanks!. I have SNP calls, so how can I convert them in genotypes such as `AA, AB, and BB`. ...
written 8 months ago by AHW40
1
vote
1
answer
226
views
1
answer
How to represent genotypes of form 1|1
... I have a VCF file and the genotypes look like 1|0 1|0 0|1 1|0 0|1 0|1 0|1 0|0 In my other file, I have genotypes like `AA, AB and BB` I was wondering if I can represent them in an equivalent form. 1|0 1|0 1|1 1|0 0|1 0|0 AB AB AA ...
genome vcf written 8 months ago by AHW40 • updated 8 months ago by Yean120
0
votes
1
answer
215
views
1
answers
Comment: C: How to get bi-allele genotype data from 1000 genome project for African populati
... Thank you so much for your comments. I got the data for the specific African populations and my data looks like CHROM POS ID REF ALT QUAL FILTER ...
written 8 months ago by AHW40
1
vote
1
answer
215
views
1
answer
How to get bi-allele genotype data from 1000 genome project for African population
... I am trying to get bi-allele genotype data from the 1000 genome project for the African populations. It would be great if anyone can take me to the link. ...
genome written 8 months ago by AHW40 • updated 8 months ago by Kevin Blighe65k
0
votes
0
answers
393
views
0
answers
Can I use UCSC genome browser to annotate Epic data
... I have Epic methylation data and was just trying to find annotations for CpGs, however, I don't find some CpGs in the genome browser. I can find some CpGs which I believe may be from 450K data. I would like to know if UCSC browser has Epic CpG annotations. I already have Illumina annotation file f ...
annotation written 14 months ago by AHW40 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
266
views
0
answers
Comment: C: I want to know if there is reference for brain cell types
... Actually, I want to calculate the cell proportions of the brain-based methylation samples on Epic chip. So I need to have a reference brain cells proportion like the link above for an R package. Is it like that? ...
written 14 months ago by AHW40
0
votes
0
answers
266
views
0
answers
Comment: C: I want to know if there is reference for brain cell types
... I am looking for methylation data, can you point me to that. ...
written 14 months ago by AHW40
0
votes
0
answers
266
views
0
answers
I want to know if there is reference for brain cell types
... I am curious to know if there exists any database or package that gets us to reference brain cells. Like there are many R packages for blood cell types such as for Epic chips. https://bioconductor.org/packages/release/data/experiment/vignettes/FlowSorted.Blood.EPIC/inst/doc/FlowSorted.Blood.EPIC.htm ...
R methylation written 14 months ago by AHW40
0
votes
2
answers
481
views
2
answers
Comment: C: Infinium MethylationEPIC BeadChip probes with cross-hybridisation potential
... Thank you for your comment. I already go the data from that paper and was wondering if it is up to date. ...
written 17 months ago by AHW40

Latest awards to AHW

Popular Question 14 months ago, created a question with more than 1,000 views. For what is targets.txt file in codelink R package
Popular Question 24 months ago, created a question with more than 1,000 views. For what is targets.txt file in codelink R package
Popular Question 2.4 years ago, created a question with more than 1,000 views. For what is targets.txt file in codelink R package
Popular Question 2.5 years ago, created a question with more than 1,000 views. For what is targets.txt file in codelink R package
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Is reference genome same for DNA and RNA sequence alignment
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Is reference genome same for DNA and RNA sequence alignment

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1188 users visited in the last hour