User: johnsonnathant

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Answer: A: How to count fastq reads
... for i in `ls *.fastq.gz`; do echo $(zcat ${i} | wc -l)/4|bc; done * of note: ` are around ls .fastq.gz Explanation: For all gzip compressed fastq files, display the number of reads since 4 lines = 1 reads *Just a good one-liner to see how many reads obtained from something like demultiple ...
written 10 weeks ago by johnsonnathant0 • updated 10 weeks ago by genomax57k

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