User: waqasnayab

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waqasnayab130
Reputation:
130
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Trusted
Location:
Pakistan
Last seen:
4 days, 9 hours ago
Joined:
2 years, 5 months ago
Email:
w*********@gmail.com

Posts by waqasnayab

<prev • 71 results • page 1 of 8 • next >
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Comment: C: Copy Sample ID from VCF file to ID column
... YES, Pierre, it worked for me, although just cross-checking a bit, will further confirm this command...,,,!!!!! ...
written 4 days ago by waqasnayab130
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Copy Sample ID from VCF file to ID column
... Hi, I have a VCF file. If any of the sample has genotype 0/1 and 1/1, than the sample ID of such genotype should be pasted into the ID column like (I am just putting here ID and sample column): ID sample1 sample2 sample3 rs123456 0/0 0/1 0/1 rs789101 1/1 0/0 0/1 rs11213145 0/0 1/1 ...
genome next-gen snp sequencing written 4 days ago by waqasnayab130 • updated 4 days ago by Pierre Lindenbaum99k
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Comment: C: Compare two columns of same file as paired rows
... Hi Kevin, You exactly understand the situation. I tried with the dummy file and then with my original file. I got exactly the output which I want. I cross-checked manually as well. Great Thanks, Waqas. ...
written 5 weeks ago by waqasnayab130
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Compare two columns of same file as paired rows
... Hi, Dear Community, I have a file like: CHR POS AACHANGE EFFECT chr1 11779914 R88W _ chr1 11779915 R88Q _ chr1 19694500 R478 H chr1 19694501 R478H H chr1 23875429 Q63 R chr1 23875430 Q63R R chr1 84574386 R10 L chr1 84574387 R10L L chr1 89186388 E551 ...
genome next-gen snp written 5 weeks ago by waqasnayab130 • updated 5 weeks ago by Kevin Blighe3.0k
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Comment: C: Remove lines if duplicated values in column 1 has specific condition for column
... GREAT Thanks, it worked perfectly for me, Regards, Waqas. ...
written 9 weeks ago by waqasnayab130
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Remove lines if duplicated values in column 1 has specific condition for column 2
... Hi Community, I have a multi-column file, but here I am mentioning just two columns: Contig0.100010-snap.2 93.4065934066 Contig0.100014-snap.1 67.3611111111 Contig0.100025-snap.1 72.9411764706 Contig0.100025-snap.1 74.1176470588 Contig0.100025-sn ...
sequence alignment snp blast written 9 weeks ago by waqasnayab130 • updated 9 weeks ago by Sej Modha2.0k
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Comment: C: Set of genes correlate with your gene
... Yeah, I am just wondering around. Whats the best possible way? ...
written 4 months ago by waqasnayab130
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Comment: C: Set of genes correlate with your gene
... if I do that, so these are those five genes that highly correlated with my gene of interest....,,,!!!???? ...
written 4 months ago by waqasnayab130
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Comment: C: Set of genes correlate with your gene
... these are the correlation values calculated from the expression values. The table shown here is just the transpose one. ...
written 4 months ago by waqasnayab130
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Set of genes correlate with your gene
... Hi, I am in this situation: https://www.biostars.org/p/158545/ I have two genes of interest (with 0.72 correlation to each other). I would like to find set of genes or cluster of genes that are correlated with these two genes? Is there any way to have a heatmap of top 5 correlated genes to my tw ...
R next-gen correlation rna-seq written 4 months ago by waqasnayab130

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Popular Question 9 weeks ago, created a question with more than 1,000 views. For Interproscan nucleotide sequence scanning
Supporter 5 months ago, voted at least 25 times.
Student 19 months ago, asked a question with at least 3 up-votes. For Donation of Old / Refurbished Computer Servers for setting up Bioinformatics Lab

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