User: waqasnayab

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waqasnayab110
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110
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Location:
Pakistan
Last seen:
5 days, 10 hours ago
Joined:
2 years ago
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Posts by waqasnayab

<prev • 60 results • page 1 of 6 • next >
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Comment: C: Print rows only if number matches
... Yes, it works fine, If I made some changes to the script will come up to you..,,,!!!! ...
written 4 weeks ago by waqasnayab110
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Comment: C: Print rows only if number matches
... I checked manually as well as by your python solution, it works perfectly fine. What if I have the multi-column file and the same column is present at column 19, and I need to do the same task? How to mention column number so that filtering would have been taking place on the basis of column 19..., ...
written 4 weeks ago by waqasnayab110
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Comment: C: Print rows only if number matches
... for example, if my input is like this: P415T P415T V457I V457 A214G A214 T418 I419V Whatever the character is present at first place, either P (in the first two lines) or V (in the lines three and four and so on,,,), I want to print those rows in which the numbers a ...
written 4 weeks ago by waqasnayab110
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Print rows only if number matches
... Hi, Dear Community, I have a column like this: D309 E308 G296 T297A P415T P415T V457I V457 A214G A214 T418 I419V P259 P259L L191 A190 R478 R478H . .. ... or in other words you can say that this column is present in a very bi ...
next-gen snp sequencing written 4 weeks ago by waqasnayab110 • updated 4 weeks ago by Pierre Lindenbaum93k
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Comment: C: Extract SNPs within 5 bps distance apart
... Yes, Pierre GATK's VariantFiltration worked for me. I wanted the exact same thing...,,,!!!! Big Thanks...,,,,!!!! Cheers, Waqas. ...
written 9 weeks ago by waqasnayab110
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Comment: C: Extract SNPs within 5 bps distance apart
... yeah, chromosomal positions (second column) is my target. I searched on google but I failed. Is there a way, to do the same in awk? Thanks, Waqas. ...
written 9 weeks ago by waqasnayab110
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Extract SNPs within 5 bps distance apart
... Hi, I am wondering is there a way to extract / print those variants from a vcf file whose distance is not more than 5 bps apart? Regards, Waqas. ...
vcf R next-gen snp written 9 weeks ago by waqasnayab110 • updated 9 weeks ago by sacha730
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Comment: C: Match columns of two different files and paste a value of corrsponding match exi
... @Alex This really worked for me, although have some discrepancies in lines, but I managed at the end. Thanks Alex. Best, Waqas. ...
written 3 months ago by waqasnayab110
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Match columns of two different files and paste a value of corrsponding match existed in another column
... Hi, I have two files: file1: chr1 873251 0.0620 chr1 930248 0.9210 chr1 930939 0.2110 chr1 931131 0.6050 file2: chr1 873251 rs11240779 G A 4047.9 6 0.75 8 171 23.81 1.071 53.55 ncRNA_intronic 0 FA chr1 9302 ...
genome next-gen sequencing written 3 months ago by waqasnayab110 • updated 3 months ago by Alex Reynolds18k
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Comment: C: simple statistics of column values in different rows
... Thanks for links but the problem is to how to specify the line numbers whom I want to take the simple statistics??? ...
written 6 months ago by waqasnayab110

Latest awards to waqasnayab

Supporter 4 weeks ago, voted at least 25 times.
Student 14 months ago, asked a question with at least 3 up-votes. For Donation of Old / Refurbished Computer Servers for setting up Bioinformatics Lab

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