User: Annika Forsingdal

Reputation:
210
Status:
Trusted
Location:
Copenhagen, Denmark
Twitter:
@a_forsingdal
Last seen:
1 year, 2 months ago
Joined:
5 years, 3 months ago
Email:
a***@lundbeck.com

Early carreer bioinformatician and neuroscientist working with genotyping and gene expression data in drug discovery and drug development.

Posts by Annika Forsingdal

<prev • 17 results • page 1 of 2 • next >
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Comment: C: Genetic Risk Score (GRS)/ OR values
... Hi Juliana, Yes, you should use the OR's from the previous sample (base dataset). Your target (study sample population) should be independent from your base dataset. As mentioned above you will overestimate the prediction and variance explained if your target sample is also in your base dataset. I ...
written 14 months ago by Annika Forsingdal210
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Job: Job: Bioinformatics project manager, Lundbeck, Valby, Copenhagen, Denmark
... We are looking for a project manager in our Bioinformatics Department in Clinical R&D at the Lundbeck headquarter in Valby, Copenhagen, Denmark. read more and apply via http://www.lundbeck.com/global/career/job-opportunities?Id=E1927237en ...
job industry written 2.8 years ago by Annika Forsingdal210 • updated 2.8 years ago by genomax87k
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CLCBio Genomics workbench - protein coding genes only
... Hi, I map RNA-seq fastq files to the mouse genome (GRCm38) using the RNA-seq Analysis tool available in CLC Genomics workbench 9. As a result I get mapping results to ~46K genes. This is including non-coding genes. I would like to only map to protein-coding genes as I'm working with sequencing data ...
clcbio rna-seq protein_coding written 3.0 years ago by Annika Forsingdal210 • updated 9 months ago by Jonathanjacobs250
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Job: Job: Bioinformatics expert (Copenhagen, Denmark)
... We are looking for a Bioinformatics expert to join our growing bioinformatics group at the Lundbeck headquaters in Valby, Copenhagen. We are working on a plethora of drug discovery and drug development projects in Neurology and Psychiatry. Read more and apply [here][1]. Best, Annika [1]: http: ...
rna-seq snp job written 3.3 years ago by Annika Forsingdal210 • updated 3.3 years ago by Devon Ryan96k
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Answer: A: How to compare expression in gene list
... Since you write "expression in gene list" I'm assuming that you are looking at gene expression data. If that's the case I would correlate fold changes or log2(fold changes) for each of your genes lists (P1-3) with fold changes in Z. ...
written 3.4 years ago by Annika Forsingdal210
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Comment: C: How to visualize gVCF?
... Thanks for this comment. The post you are referring to is about VCF files, does all the same applies to files in gVCF format? ...
written 3.4 years ago by Annika Forsingdal210
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How to visualize gVCF?
... Dear Biostars community, How can gVCF files be visualized? Can I use IGV as with VCF files? Do you have any recommendations for working with gVCF files? Thanks, Annika ...
gvcf written 3.4 years ago by Annika Forsingdal210
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Comment: C: Translation of chromosome coordinates across builds
... Thanks! ...
written 3.6 years ago by Annika Forsingdal210
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Translation of chromosome coordinates across builds
... Dear community, Is there a way to translate chromosomal coordinates from one build of the human genome to another? Thanks, Annika ...
human genome written 3.6 years ago by Annika Forsingdal210 • updated 3.6 years ago by Pierre Lindenbaum129k
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Ensembl gene ID conversion to gene name
... Hi, In our RNA-seq pipeline we have a step after mapping that converts ensembl gene ID's (eg ENSMUSG00000096126) to gene names. When the pipeline was builded we mapped read files to older versions of the mouse genome. What happens when new samples mapped on the newest version of the murine genome ...
reference genome rna-seq written 4.8 years ago by Annika Forsingdal210 • updated 4.7 years ago by EagleEye6.6k

Latest awards to Annika Forsingdal

Great Question 16 months ago, created a question with more than 5,000 views. For Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For PhD course or workshop in statistics for RNA-seq analysis
Appreciated 2.7 years ago, created a post with more than 5 votes. For Job: Bioinformatics expert (Copenhagen, Denmark)
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
Commentator 2.7 years ago, created a comment with at least 3 up-votes. For C: PhD course or workshop in statistics for RNA-seq analysis
Appreciated 3.2 years ago, created a post with more than 5 votes. For Job: Bioinformatics expert (Copenhagen, Denmark)
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
Popular Question 4.3 years ago, created a question with more than 1,000 views. For Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
Supporter 4.3 years ago, voted at least 25 times.
Scholar 4.9 years ago, created an answer that has been accepted. For A: What is transcript expression level analysis and DE analysis?
Autobiographer 4.9 years ago, has more than 80 characters in the information field of the user's profile.

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