User: Angelo Victoria

Reputation:
30
Status:
New User
Location:
Philippines/University of the Philippines Diliman
Last seen:
12 hours ago
Joined:
3 years, 4 months ago
Email:
a***************@gmail.com

Hallo! Wie geht's? 

I'm a graduate student from the Philippines studying Cell & Molecular Biology. I'm looking forward to learn the ways of Bioinformatics for my MSc. thesis and as a career path.

I also am learning German and Swedish during my free time while waiting for the PCR.

Tack!

Posts by Angelo Victoria

<prev • 8 results • page 1 of 1 • next >
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Possibility of a de-novo assembly but with a gene as starting point/reference?
... I am trying to de-novo assemble a cyanobacterium genome and I'm wondering whether I could use a characterized gene as a kind of reference or "seed" sequence? Is this possible using SPAdes' reference-based assembly? There are multiple reports of the conservation of this specific gene cluster that I'v ...
genome assembly sequencing written 2.1 years ago by Angelo Victoria30
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SPAdes error "Missing @SQ header"
... Hi! I am trying to do a de-novo assembly of a prokaryotic genome using SPAdes 3.5.0. I have been getting the following error > [samopen] no @SQ lines in the header. > [sam_read1] missing header? Abort! I tried doing a subset of the reads and it worked. Thinking that it was a memory issue, ...
genome assembly software error sequencing written 2.4 years ago by Angelo Victoria30 • updated 2.4 years ago by Philipp Bayer5.6k
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Comment: C: Help needed using FastX toolkit: Segmentation fault
... It's an introductory exercise so I guess it's all right for training. I'm sure we would be introduced to more recent and efficient tools later on.  ...
written 2.8 years ago by Angelo Victoria30
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Comment: C: Help needed using FastX toolkit: Segmentation fault
... Hi! I found the fix just now. Apparently, I was using "-Q 33" which is intended for Illumina 1.8 reads. I noticed in FastQC reports that my data are encoded (is that the correct term?) in Illumina 1.3 so I have to use "-Q 64". :) ...
written 2.8 years ago by Angelo Victoria30
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Help needed using FastX toolkit: Segmentation fault
... Hi. Novice question here. I have been practicing a very basic exercise for a project in one of my introductory courses and I have been doing fine with the quality trimming and filtering of a set of reads. However, when I used the data provided by our course facilitators, the quality filtering step ...
fastx quality-control written 2.8 years ago by Angelo Victoria30 • updated 2.8 years ago by p.papathanos0
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
... Oh hi! I guess I'm from the other side of the spectrum as I have virtually zero knowledge in computer science. I'm from Diliman but we occasionally travel to the Institute of Plant Breeding for our project. My current introductory course in Bioinformatics allows the use of Windows as of the moment b ...
written 3.1 years ago by Angelo Victoria30
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Help a graduate student going into Bioinformatics looking for a new personal laptop. Should I get a Mac or a PC?
... Hello, Biostars!  I'm new here and I'm really interested in pursuing bioinformatics. I'm currently a first-year MSc student working in a project involving genomics. The actual computer work will be concentrated next year so I have some amount of time to learn everything I can manage. My undergrad i ...
bioinformatics computer next-gen newbie hardware written 3.4 years ago by Angelo Victoria30 • updated 3.1 years ago by abrahamdsl10
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Comment: A: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... Great! This series is excellent especially for beginning graduate students like me. ...
written 3.4 years ago by Angelo Victoria30

Latest awards to Angelo Victoria

Popular Question 7 months ago, created a question with more than 1,000 views. For Help needed using FastX toolkit: Segmentation fault
Autobiographer 3.4 years ago, has more than 80 characters in the information field of the user's profile.

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