User: Hongru

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Hongru0
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Posts by Hongru

<prev • 5 results • page 1 of 1 • next >
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Is it possible to plot a radiation tree with ggtree? how?
... Is it possible to plot a radiation tree (example below) with ggtree? If so, how? If not possible, are there any other R packages that can automate radiation tree making? ![radiation tree][1] [1]: https://s24.postimg.org/rok2sb70l/Screen_Shot_2017-05-02_at_9.25.30_AM.png ...
ggtree phylogenetic tree radiation written 2.1 years ago by Hongru0 • updated 2.1 years ago by Joseph Hughes2.7k
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how to rotate chordDiagram in library circlize?
... I made a nice chord diagram with circlize library in R which looks like this: ![original plot][1], but I want it to rotate it to look it like this: ![rotated plot][2]. How do I do it in R with this package? [1]: https://s1.postimg.org/x5dganr1r/Screen_Shot_2017_03_17_at_1_53_28_PM.png [ ...
chroddiagram circlize written 2.3 years ago by Hongru0 • updated 2.3 years ago by Zuguang Gu140
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Comment: C: ggtree "open_tree" not found in linux version
... Thanks for pointing to website, it helped! I found that I installed an outdated version of ggtree, and I further discovered that it is because my BiocInstaller version is outdated, so I followed this: http://bioconductor.org/install/#install-bioconductor-packages. Now problem solved, thanks again :- ...
written 2.4 years ago by Hongru0
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Comment: C: ggtree "open_tree" not found in linux version
... I am sorry I am a newbie to bioconductor. But I just installed ggtree yesterday (2017-01-09) with the biocLite("ggtree") command, so I assume it is the devel version you talked about in the post? If not, how can I install the devel version? BTW, I did exactly the same thing with my mac, it worked p ...
written 2.4 years ago by Hongru0
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ggtree "open_tree" not found in linux version
... I am trying to manipulate tree in R with ggtree package, but it says "Error: could not find function "open_tree"". My system is: Ubuntu 14.04.4 LTS (GNU/Linux 4.2.0-27-generic x86_64) The R version: R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" ...
ggtree written 2.4 years ago by Hongru0 • updated 2.4 years ago by Guangchuang Yu2.2k

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