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Posts by james.blackshaw
... I’m trying to run bcftools stats on multiple files and then have plot-vcfstats give me a single plot that shows the data for each file. If I run plot-vcfstats on one file, it’s fine. If I try to run it on multiple files, it breaks. Input: plot-vcfstats -p Chr_all/ Chr12.vcf.gz_stats.txt ChrX.vcf.g ...
... I have been using bcftools stats, but I’m uncertain about what several fields in the output mean. The documentation is good for what the command line options do, but has no breakdown of what the output means or how it is calculated. This is part of the output from vcftools stats on my file: # SN, ...
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