User: james.blackshaw

james.blackshaw • 10

Reputation:: 10
Status:: New User
Location:: United Kingdom
Last seen:: 5 years, 4 months ago
Joined:: 5 years, 8 months ago
Email:: j**************@gmail.com

Posts by james.blackshaw

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Divide by 0 error when passing multiple files to plot-bcfstats

... I’m trying to run bcftools stats on multiple files and then have plot-vcfstats give me a single plot that shows the data for each file. If I run plot-vcfstats on one file, it’s fine. If I try to run it on multiple files, it breaks. Input: plot-vcfstats -p Chr_all/ Chr12.vcf.gz_stats.txt ChrX.vcf.g ...

vcf bcftools matplotlib written 5.4 years ago by james.blackshaw • 10

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how is the output of bcftools stats calculated?

... I have been using bcftools stats, but I’m uncertain about what several fields in the output mean. The documentation is good for what the command line options do, but has no breakdown of what the output means or how it is calculated. This is part of the output from vcftools stats on my file: # SN, ...

bcftools written 5.4 years ago by james.blackshaw • 10 • updated 5.4 years ago by Biostar ♦♦ 20

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