User: rahel14350

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rahel1435020
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Posts by rahel14350

<prev • 48 results • page 1 of 5 • next >
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Comment: C: Differentially methylated regions (DMRs) and sites (DMCs) are not in the same re
... Many thanks for your reply. Now it is more clear for me why I have such an output. ...
written 4 weeks ago by rahel1435020
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Comment: C: Differentially methylated regions (DMRs) and sites (DMCs) are not in the same re
... Thanks a lot for your reply. I was running all different packages and having the same result, now it is clear for me. ...
written 4 weeks ago by rahel1435020
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Differentially methylated regions (DMRs) and sites (DMCs) are not in the same region
... Dear all, I have some RRBS data with very low coverage and high number of NAs which they are aligned with BSMAP (more than 900,000 rows contain NAs). I did try many different packages but in all of them the DMRs and DMcs are completely different for example if gene A is detected as significantly me ...
metilene rrbs rnbeads methylkit written 5 weeks ago by rahel1435020 • updated 5 weeks ago by Devon Ryan81k
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Comment: C: error in using LOLA enrichment analysis in RnBeads
... I changed the version and unfortunately, I still have the same error! ...
written 9 weeks ago by rahel1435020
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Comment: C: error in using LOLA enrichment analysis in RnBeads
... sorry, edited now! even now I still have the error! ...
written 9 weeks ago by rahel1435020
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Comment: C: error in using LOLA enrichment analysis in RnBeads
... Here is: > sessionInfo() R version 3.4.4 (2018-03-15) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.4 LTS Matrix products: default BLAS: /usr/lib/libblas/libblas.so.3.6.0 LAPACK: /usr/lib/lapack/liblapack.so.3.6.0 locale: [1 ...
written 9 weeks ago by rahel1435020
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Comment: C: error in using LOLA enrichment analysis in RnBeads
... Many thanks for your prompt reply. The last version is 1.12.1 and I have the same Error there as well. I also have LOLA installed and included that one too (require(LOLA)) but still the same error is happening. ...
written 9 weeks ago by rahel1435020
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Comment: C: error in using LOLA enrichment analysis in RnBeads
... I want to start RnBeads full pipeline and in the beginning with setting rnb.options, I have this error. Here is my options: >rnb.options( exploratory.intersample = FALSE, exploratory.region.profiles = NULL, differential.enrichment.go=T, differential.enric ...
written 9 weeks ago by rahel1435020 • updated 9 weeks ago by WouterDeCoster30k
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error in using LOLA enrichment analysis in RnBeads
... Dear all, I am doing Diff. meth. analysis for RRBS data using RnBeads. I am interested to do enrichment analysis from Lola package here but I have this error: >Error in rnb.getOption(differential.enrichment.lola = TRUE) : >unused argument (differential.enrichment.lola = TRUE) Can y ...
enrichment lola rrbs rnbeads written 9 weeks ago by rahel1435020 • updated 9 weeks ago by WouterDeCoster30k
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Comment: C: annotation of RRBS DMRs in RnBeads or other packages
... I used package annotatr and it helped me. https://bioconductor.org/packages/release/bioc/vignettes/annotatr/inst/doc/annotatr-vignette.html ...
written 6 months ago by rahel1435020

Latest awards to rahel14350

Scholar 11 months ago, created an answer that has been accepted. For A: RRBS data analysis using RnBeads give Scan() error

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