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Showing :
answers
0
votes
1
reply
1.3k
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Answer:
A: Bioinformatics project involving the study of theta- defensin
7.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.7k
views
Answer:
A: SNV calling: what is a relative cost of FP and FN?
7.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
8.5k
views
Answer:
A: Extracting specific SNPs from vcf file
7.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
0
replies
3.6k
views
Answer:
A: trim_galore finds a different adaptor than the one I expected...
7.6 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.3k
views
Answer:
A: Counting read orientation between ranges in a bed file
7.6 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
5.3k
views
Answer:
A: bcftools filter or bcftools isec to EXCLUDE dbSNP snps
7.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
0
replies
6.7k
views
Answer:
A: What is the most popular file format for storing sequence alignments and associa
7.6 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
4.2k
views
Answer:
A: Getting unique reads from multiple fastq files
7.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
6.4k
views
Answer:
A: Different ensembl versions
7.6 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
6.9k
views
Answer:
A: MutScan: Detect important mutations by scanning FastQ files directly
7.6 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
2.1k
views
Answer:
A: PE read flag 69 and 137 meaning
7.6 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
3.4k
views
Answer:
A: Empty output from Picard's EstimateLibraryComplexity
7.7 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
2.0k
views
Answer:
A: bedtools coverage double-counting
7.7 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
1.6k
views
Answer:
A: What are the applications of read-reference sequence mapping?
7.7 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
10k
views
Answer:
A: CIGAR and query sequence are of different length when trying to convert from sam
7.7 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
2.1k
views
Answer:
A: miRNA DE analysis with mirdeep2
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
5.9k
views
Answer:
A: bedtools error: could not find indexes
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.5k
views
Answer:
A: start and end coordinates reversed in ensembl
7.7 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
1.7k
views
Answer:
A: parsing bed file
7.7 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
0
replies
1.6k
views
Answer:
A: Unreasonable to ask the hired bioinformatician for his R-Script?
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.3k
views
Answer:
A: A consistent set of reference files that will work well with each other for WEX
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
16k
views
Answer:
A: How to select aligned reads below certain mapping Quality (from BWA)?
7.7 years ago by
harold.smith.tarheel
★ 4.9k
9
votes
2
replies
16k
views
Answer:
A: How to select aligned reads below certain mapping Quality (from BWA)?
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
2
replies
2.7k
views
Answer:
A: Use bedtool to get number of shared features from intersetions
7.7 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
1.3k
views
Answer:
A: How to automate the generation of a VCF file for
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
3.7k
views
Answer:
A: unpaired R1 and R2 sequences
7.7 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
1.9k
views
Answer:
A: Extract sequences flanking SNPs from organism without reference genome
7.7 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
5.7k
views
Answer:
A: SPADES assembly failed, unequal amount of reads
7.7 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
2.2k
views
Answer:
A: worm base genes biomaRt filter
7.8 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
17k
views
Answer:
A: Trying to get genome for bedtools
7.8 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.5k
views
Answer:
A: Filtering Homeologous SNPs
7.8 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
3.9k
views
Answer:
A: Converting to fastq and demultiplexing Illumina Hiseq4000 data using bcl2fastq
7.8 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
0
replies
12k
views
Answer:
A: Chip-seq analysis with input and spike-in
7.8 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
1
reply
3.2k
views
Answer:
A: Any tools available to generate fake raw reads from assembled genomes?
7.8 years ago by
harold.smith.tarheel
★ 4.9k
3
votes
1
reply
2.0k
views
Answer:
A: Biggest barriers to making sense of sequence data
7.8 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
4.0k
views
Answer:
A: WGS .fsa_nt file to .fastq.gz
7.9 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
3
replies
4.9k
views
Answer:
A: How to know the position of various transcripts of a given gene in the genomic s
7.9 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
7.0k
views
Answer:
A: Remove variants that are homozygous-reference (0/0) in two VCF files
7.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
0
replies
1.8k
views
Answer:
A: How to get sequence for a particular locus from .gff3 file?
7.9 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
1.4k
views
Answer:
A: NGS throughput historical data
7.9 years ago by
harold.smith.tarheel
★ 4.9k
4
votes
1
reply
11k
views
Answer:
A: If the index sequences in my Illumina FASTQ headers aren't the barcodes, then wh
7.9 years ago by
harold.smith.tarheel
★ 4.9k
7
votes
3
replies
33k
views
Answer:
C: Illumina Instrument Type from fastq?
7.9 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
33k
views
Answer:
A: Illumina Instrument Type from fastq?
7.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
15k
views
Answer:
A: Qual score in VCF file
7.9 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
1.6k
views
Answer:
A: Is there any non-computational method for distinguishing haplotypes of a bacteri
7.9 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
1
reply
1.8k
views
Answer:
A: PCR band can't be revealed by DNA sequencing
7.9 years ago by
harold.smith.tarheel
★ 4.9k
2
votes
1
reply
3.5k
views
Answer:
A: Best de novo assembler for insect genome ?
7.9 years ago by
harold.smith.tarheel
★ 4.9k
1
vote
0
replies
1.7k
views
Answer:
A: Evaluating the Genome aseemblies
7.9 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
1.7k
views
Answer:
A: is there any software designed for the VCF file similarity search?
8.0 years ago by
harold.smith.tarheel
★ 4.9k
0
votes
1
reply
2.2k
views
Answer:
A: How assembler manages a 100kb duplication
8.0 years ago by
harold.smith.tarheel
★ 4.9k
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