User: Ruet

gravatar for Ruet
Ruet70
Reputation:
70
Status:
New User
Location:
United States
Last seen:
2 years, 9 months ago
Joined:
3 years, 1 month ago
Email:
r*********@gmail.com

Posts by Ruet

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Comment: C: Counting reads for gene transcripts with overlapping loci
... Hi Mark, Yes, my RNA-seq protocol is stranded and I am using the information for read counting in my analysis. I am using the "union" model in the figure below, and I am not counting ambiguous reads.  Thanks!     ...
written 3.1 years ago by Ruet70
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Comment: C: Cuffmerge running error
...   Hi Hana,  I am running cuffmerge using cufflinks v2.1.1 and I ran into the exact same problem you mentioned above. I was wondering if you ever figured it out? Also, which version of cufflinks were you using (I understand it has been a while since you made the post)?  Thank you,  RQF ...
written 3.1 years ago by Ruet70
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Counting reads for gene transcripts with overlapping loci
... I am working with the human genome and have been allowing single mapping during alignment with Tophat. When I count reads that map to a particular loci, if a read falls on two gene transcripts, I do not count the ambiguous read.  The transcripts I am interested in are snRNAs and snoRNAs but is seems ...
gene R counting reads rna-seq written 3.1 years ago by Ruet70 • updated 3.1 years ago by Biostar ♦♦ 20

Latest awards to Ruet

Appreciated 3.1 years ago, created a post with more than 5 votes. For Counting reads for gene transcripts with overlapping loci
Student 3.1 years ago, asked a question with at least 3 up-votes. For Counting reads for gene transcripts with overlapping loci

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